PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g72300.2.p | ||||||||
Common Name | BRADI_1g72300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 343aa MW: 39502.1 Da PI: 9.5164 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.3e-11 | 204 | 249 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WTt+E+ l++++ + G g W+ I+ + +++t+ q+ s+ qky Bradi1g72300.2.p 204 RFWTTDEHRLFLQGLNACGRGKWRNISMNFVTTKTPAQIASHAQKY 249 56*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.037 | 198 | 254 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-9 | 202 | 252 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.8E-14 | 203 | 252 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.67E-14 | 203 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 203 | 251 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-6 | 206 | 250 | No hit | No description |
Pfam | PF00249 | 3.4E-8 | 206 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MARSLRDWWT RRSQVFARGV GTSAVRYPRS RVHTICCVLH TPYSSQITMD PRENQEWTSY 60 EVEEARSIIA RLNSNNCSYH GNNHDKNKKH NIMLELQAKF PWKTIKQVKD LYLDLVVEMH 120 MMQCQQKEYG CVDGKHVNIC TFHGHVKKNF GVPEEQEVSM DHKDFSFGFT SGHVGIMETM 180 KEVPMLGENK MPIHQPVVAP CARRFWTTDE HRLFLQGLNA CGRGKWRNIS MNFVTTKTPA 240 QIASHAQKYF KRIEGKGSGT QRYSIHDVEL GNNDPWKTED SSRPTKRSCM SMPTSSFLQV 300 PSTSFVTMDN MAQFKFPSLK KTTQLVQSEK HMMDSVADPW RS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 291 | TKRSCMSM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g72300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752587.2 | 1e-170 | protein REVEILLE 1 | ||||
TrEMBL | A0A0Q3KFN3 | 0.0 | A0A0Q3KFN3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G72300.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 | Representative plant | OGRP2767 | 5 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-22 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g72300.2.p |