PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72300.1.p
Common NameBRADI_1g72300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 302aa    MW: 34714.4 Da    PI: 9.9752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11163208247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WTt+E+ l++++ +  G g W+ I+  + +++t+ q+ s+ qky
  Bradi1g72300.1.p 163 RFWTTDEHRLFLQGLNACGRGKWRNISMNFVTTKTPAQIASHAQKY 208
                       56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.037157213IPR017930Myb domain
SMARTSM007174.2E-9161211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-8162210IPR009057Homeodomain-like
SuperFamilySSF466893.96E-14162213IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-14162211IPR006447Myb domain, plants
PfamPF002492.8E-8165208IPR001005SANT/Myb domain
CDDcd001671.83E-6165209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARSLRDWWT RRSQVFARGV GTSAVRYPRS RVHTICCVLH TPYSSQITMD PRENQEWTSY  60
EVEEARSIIA RLNSNNCSYH GNNHDKNKKH NIMLELQAKF PWKTIKQNFG VPEEQEVSMD  120
HKDFSFGFTS GHVGIMETMK EVPMLGENKM PIHQPVVAPC ARRFWTTDEH RLFLQGLNAC  180
GRGKWRNISM NFVTTKTPAQ IASHAQKYFK RIEGKGSGTQ RYSIHDVELG NNDPWKTEDS  240
SRPTKRSCMS MPTSSFLQVP STSFVTMDNM AQFKFPSLKK TTQLVQSEKH MMDSVADPWR  300
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243250TKRSCMSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752587.21e-145protein REVEILLE 1
TrEMBLI1H8W80.0I1H8W8_BRADI; Uncharacterized protein
STRINGBRADI1G72300.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-21MYB family protein