PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72196.1.p
Common NameBRADI_1g72196
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 677aa    MW: 79129.4 Da    PI: 9.3179
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2030121190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       k+Yn+YA   GF vrk+  + + +++   +r f Cskeg+r+ ++ + t+++r++ra +r+gCka+l+++++   g+w  + ++ eHnH+l+
  Bradi1g72196.1.p  30 KYYNSYALLKGFGVRKEDLECKPDTKIAFRRLFSCSKEGYRAVKHFNaTNRKRQPRALSRCGCKARLEIELHMeCGEWFAKIFVDEHNHPLV 121
                       69********************999999**************999886899999*****************9989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1930121IPR004330FAR1 DNA binding domain
PfamPF105514.6E-34228322IPR018289MULE transposase domain
PROSITE profilePS509669.211505544IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MESGGVSLED LEEYYMVVNQ TFRSEEEGYK YYNSYALLKG FGVRKEDLEC KPDTKIAFRR  60
LFSCSKEGYR AVKHFNATNR KRQPRALSRC GCKARLEIEL HMECGEWFAK IFVDEHNHPL  120
VKPDHTAFIR SHRGLSDAQK ADVIEYGIGG LRTHQIMEKQ HGGYYKVGFV SRNLYNYVGK  180
YKKGSKDGML NLDGEFFYKY KTEEEGHLQN LFWTDAQSRI DYDAFGGVVV FDSTYRVNKY  240
NLPFVPFIGV NHHHSTTVFG CGIVSDETVA SYVWLLKAFL EATQQNPPRS VMTDGDRAMA  300
KAISMVFPGT DHRLCSWHIE QNMIRHLCNP KLGDFRKFVY HAMKVDDFER RWVEFKDKYE  360
ITEKDEWINR MYELRKKWSK AYTKGRYFLG MQSNQRSESL NSRLHKNLDR RMSLVDLLEH  420
YDLCLSRIRR NESQLDAEAS QTVPFTDLHA EPLERSAART YTPEMFKRVK VEIIRLVEWE  480
IAEVTRHHGL SRYVVCLKRR THVKYDVRFS FVGPLLKSVS CPCLKFDSKD IPCTHIFSVL  540
KYLGLLTIPS CCVKQRWTMK TKPADRDGNL HEWSERMNRY HELRNMASLH LFKASRSMEV  600
SKRVIDFLQT ILDEEMEDDS DEAARVGPFP PYFSGSNQAA THTVLDPKPI KSKGARSKKR  660
WKPFHETFLA NQKRQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1497501KRRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72196.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314911.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2DUR80.0A0A2K2DUR8_BRADI; Uncharacterized protein
STRINGTraes_2DL_10A3AF467.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5