PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72150.6.p
Common NameBRADI_1g72150, LOC100827009
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25356.7 Da    PI: 6.5623
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72150.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.1e-251261251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien   rqvtfskRr g++KKAeELS+LCdaev + +fs tgkl+ ++s
  Bradi1g72150.6.p 12 RIENLAARQVTFSKRRRGLFKKAEELSILCDAEVGLAVFSATGKLFQFAS 61
                      8**********************************************986 PP
2K-box47.76.7e-17921731899
             K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       + + a+L++e+ +    +R++ Ge+L+sL++++Lq Le++Le++l+++ ++K++ +l++i+ l +k  +l een +L++++ 
  Bradi1g72150.6.p  92 DSNCARLREELAEASLWLRQMRGEELQSLNIQQLQALEKRLESGLSSVLKTKSQKILDEISGLERKRTQLIEENSRLKEQVS 173
                       567889999999999999************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-32362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.179363IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-25525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-29588IPR002100Transcription factor, MADS-box
CDDcd002653.97E-38576No hitNo description
PfamPF003195.2E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-254061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.77588178IPR002487Transcription factor, K-box
PfamPF014863.3E-1593172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLAVF SATGKLFQFA  60
SSSMNQIIDR YNSHSKILQR ADEPSQLDLH EDSNCARLRE ELAEASLWLR QMRGEELQSL  120
NIQQLQALEK RLESGLSSVL KTKSQKILDE ISGLERKRTQ LIEENSRLKE QVSKMEMQVA  180
ADSPVVYEEG QSSESVTNAS YPRPPLDTED SSDTSLRLGL PLFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19575373MEF2C
5f28_B3e-19575373MEF2C
5f28_C3e-19575373MEF2C
5f28_D3e-19575373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72150.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693070.0KF469307.1 Brachypodium distachyon MADS-box transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288323.11e-162MADS-box transcription factor 47-like
RefseqXP_010230402.11e-162MADS-box transcription factor 47-like isoform X2
RefseqXP_010230689.11e-162MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R01e-120MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLI1H8V11e-160I1H8V1_BRADI; MADS-box transcription factor 12
STRINGBRADI1G72150.11e-150(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  3. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]