PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g71990.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 443aa    MW: 47620.7 Da    PI: 9.0156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g71990.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.9e-15230281155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Bradi1g71990.2.p 230 QRRTHIAVERNRRRQMNDYLAGLRSLMPPS---YAQRGDQASIVGGAINYVKELE 281
                       79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-13228285No hitNo description
PROSITE profilePS5088815.942229280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12230281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-14230292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11235286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSPRSPLVCA CMVPPSLGPP RLRVPGPTHG PARPASSCYK TRPRLLPGLL TRRLVLRVAY  60
LTDPVRPCEK RSATYQISVA RRRQGLLMAL EAVVFAQQDA HGHHLGYGGA PPGSSWESSS  120
AAPASYTLAP WCDDDGLAQA GAGSSGSGGL SDIFEDWDNH HRLAAAASVE DQFEAGSKDQ  180
YQSSDAYSTE GNKGKAPAQD QPAVVAGAAA GRRKRRRAKV VKNKEEVECQ RRTHIAVERN  240
RRRQMNDYLA GLRSLMPPSY AQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSVRSSRDGS  300
RSTDPGGRSP FAGFFTFPQY STIASSAHCS PDSSGVSNAC HNVVKPEAGV ADIEVTMAEG  360
HASLKVLVRR LPRQLLKLVA GLQQLRVPAL HLNVTTLDTM ALYSFSLKVE DGSKLGSVED  420
IAAAVHEILA RVQREEEEEA QA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212216RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g71990.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420304e-77BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561963.10.0transcription factor bHLH94
TrEMBLA0A0Q3HKG60.0A0A0Q3HKG6_BRADI; Uncharacterized protein
STRINGBRADI1G71990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-68bHLH family protein