PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g71810.2.p
Common NameBRADI_1g71810, LOC100845729
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1035aa    MW: 115552 Da    PI: 6.0409
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g71810.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11764.9e-55191362118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwl++ ei++iL+n+ +++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een +
  Bradi1g71810.2.p  19 LKEaQHRWLRPAEICEILKNYGNFRIAPEPPNRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENIN 111
                       45559**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       fqrr+yw+Lee++ +ivlvhylevk
  Bradi1g71810.2.p 112 FQRRSYWMLEEDFMHIVLVHYLEVK 136
                       **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.38915141IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-4821135IPR005559CG-1 DNA-binding domain
CDDcd001020.00802445532No hitNo description
Gene3DG3DSA:2.60.40.103.6E-5445532IPR013783Immunoglobulin-like fold
PfamPF018332.5E-5446530IPR002909IPT domain
SuperFamilySSF812963.97E-16446531IPR014756Immunoglobulin E-set
SuperFamilySSF484035.13E-17636741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.0E-18640746IPR020683Ankyrin repeat-containing domain
CDDcd002041.52E-13644738No hitNo description
PROSITE profilePS5029717.794646740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.79646678IPR002110Ankyrin repeat
PfamPF127962.1E-6651741IPR020683Ankyrin repeat-containing domain
SMARTSM002480.033679708IPR002110Ankyrin repeat
PROSITE profilePS500888.63679711IPR002110Ankyrin repeat
SMARTSM00248330718747IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-8850903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.12852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.663853882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0034854873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487876900IPR000048IQ motif, EF-hand binding site
PfamPF006120.0017877897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQHRWLRPA EICEILKNYG NFRIAPEPPN RPASGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDFMHIVLV HYLEVKAGKS SSRTREHDNM LQGARVDSPL SQLPSQTTDG ESSLSGQASE  180
YEETESDIYS GGAGYHSISG MQQHENGAGP IIDASFYSSY VPASSVGNHQ GLQATATNTG  240
FYSYDQDNLP VVPNESGHGI PFNGPNGQFD LSSWNEMTKP DKGIHQMPPY GTHVPPEQSP  300
FTEVPGIESF TFDEVYSNGL GIKDNSHADT DAEPLWQLPS AIGGSFATVD SFQQINGFLE  360
EAINYPLLKT QSSNLSDILK DSFKKSDSFT RWMTKELADV DDSQIKPSSE YWNSEDADNI  420
IGASSHDQLD QFTLGPMLAQ DQLFSIIDFS PSWAYAGAKT RILVTGKFLK PDEVIRFKWS  480
CMFGEIEVPA EILADGTLGC YSPSQKTGRV PFYVTCSNRL ACSEVREFEY RPSNSQYMDA  540
PSLHGARNKT YLQMRLDKLL SLGPDEFHAT LSNNTKELID LNRKINLLMK NNDSWSELLK  600
LAGDNELVIE DKQDQFLENC IRDKLHIWLL HKAGDGGKGP GVLDKEGQGV LHLAAALGYD  660
WAIRPTITAG VNINFRDARG WTALHWAAFC GRERTVVALI ALGAAPGALT DPSPDFPSGS  720
TPADLASSNG HKGISGYLAE SSLTCHLQTL NLKEAMGSNA SEISGLPGIG DVSERSVSPL  780
AREGLQTGSM GDSLGAVRNA AQAAARIYQV FRVQSFQRKQ AVQYEDDSGV ISDERALSLL  840
SYKTSKPGQF DPKHAAATRI QNKFRGWKGR KEFLLLRRRV VQIQAHVRGH QVRKHYRKII  900
WSVGIVEKVI LRWRRRGAGL RGFRSTEGAP DSTSSSAVDV IPNKPGEDDY SFLQEGRKQT  960
EERLQRALAR VKSMVQYPDA RDQYQRILTV VTKMQESQPM QENMLEESTE MDEGFLMSEF  1020
QELWDDDTPM PGYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g71810.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558617.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLI1H8R10.0I1H8R1_BRADI; Uncharacterized protein
STRINGBRADI1G71810.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains