PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g71330.1.p | ||||||||
Common Name | BRADI_1g71330, LOC100834136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 526aa MW: 55304.6 Da PI: 8.9115 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Bradi1g71330.1.p 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Bradi1g71330.1.p 135 WKCDKCSKKYAVQSDWKAHAKTC 157 58******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.32E-7 | 58 | 81 | No hit | No description |
SMART | SM00355 | 0.017 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.4E-5 | 59 | 81 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 100 | 130 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 123 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.32E-7 | 130 | 155 | No hit | No description |
SMART | SM00355 | 150 | 135 | 155 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MEAETSSATA ERGVSASGAA LLPPPAPPAK KKRALPGMPD PDAEVIALSP KTLMATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEVRKRVY VCPEPSCVHH DRSRALGDLT 120 GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHAKTCGSR EYRCDCGTLF SRRDSFITHR 180 AFCDALAEES AKARVPAAAE EGSSAAAAAP PPVPATPVPL QQLPPAPAQP APQPQPQHDE 240 QEREFSAAPE PVQFTPPMPS PPSVTGANVS ASTSSVSATS QSLLGSIFAP SPVAQAPLQY 300 QERAQAAVVA KPPSLCLTTD ASSSLFSAPL ADRPPPPSPS PSPHMSATAL LQKAAQMGAT 360 SSSSSYLRGL GLDISSSSPA STSSGQQHNQ HQHQQQEATM HVSFPEGSLP QWPPRLEPEP 420 APMMSAGLGL GLPYELTGGP VGNPELMMGH QSSLFSAKPA TLDFLGLGMS PTGPSASRGL 480 SVFMQPMGGA IGMAGSGAGA AETYGASRGA QAKPWERNPS SSPIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 131 | 192 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 131 | 192 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g71330.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375990 | 0.0 | AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229031.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-139 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | I1H8K2 | 0.0 | I1H8K2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G71330.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 2e-97 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g71330.1.p |
Entrez Gene | 100834136 |
Publications ? help Back to Top | |||
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