PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g71280.1.p | ||||||||
Common Name | BRADI_1g71280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26547.7 Da PI: 6.5283 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F k++++ ++++ +LA++lgL+++qV vWFqNrRa++k Bradi1g71280.1.p 63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHK 116 45689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.8 | 7.7e-35 | 63 | 147 | 2 | 86 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kkrrls+eq+++LE sF +++kLe++rK +la eLgl+++qvavWFqnrRAR+k k++E++y++L++a+da++ +n++Le+ev+ Bradi1g71280.1.p 63 KKRRLSDEQAQFLELSFMKDSKLETTRKLQLAAELGLDTKQVAVWFQNRRARHKCKRMEVEYNKLRAAHDAVVVHNCHLEAEVQY 147 9********************************************************************************9974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.969 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-14 | 61 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 62 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-16 | 63 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.5E-16 | 63 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.68E-15 | 63 | 116 | No hit | No description |
PRINTS | PR00031 | 7.6E-6 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.6E-6 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSPEEEETLL FPSSFVFPES FPAQADTPAS GGEQKKAGRQ RRRRKARLSA AAGDGAAGDD 60 AAKKRRLSDE QAQFLELSFM KDSKLETTRK LQLAAELGLD TKQVAVWFQN RRARHKCKRM 120 EVEYNKLRAA HDAVVVHNCH LEAEVQYRLL RLKARLAEAD EEKKLMAASA AATNGCGGGG 180 GGGGSSSPSS SSFSTVTQLM GQFGMEEAAD QADLTYMSEY DYNSYMMDLA GSSYLGGVYD 240 QFS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g71280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558578.1 | 1e-135 | homeobox-leucine zipper protein HOX12 | ||||
Swissprot | A2XDK5 | 2e-76 | HOX12_ORYSI; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | I1H8J5 | 1e-178 | I1H8J5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G71280.1 | 1e-179 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-32 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g71280.1.p |