PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g70942.1.p
Common NameBRADI_1g70942
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 386aa    MW: 41763.1 Da    PI: 4.8521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g70942.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.5e-121149341
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                      i + ++r   ++ R+ g++K A+ELS+LC++ vav++++
  Bradi1g70942.1.p 11 IGDRRKRAAALASRKRGLMKMASELSTLCNVPVAVVVLG 49
                      56789999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.446149IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-9159IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-13156IPR002100Transcription factor, MADS-box
PfamPF003196.1E-111149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRGKTPMGL IGDRRKRAAA LASRKRGLMK MASELSTLCN VPVAVVVLGG GPVVDGAPPH  60
HRPPLPEVWE SEQGVVERYR ALPAEKRAEH THLRYLEGNL GKEKAKLARV LLRGPAALAQ  120
PDAELNGMSL HELRALLESL DAALLATAER KKEIGLPEHD DYYGAVDVAG GAPCTGGGVY  180
YEMEEPDHQA ATREDANAMN VMRPGYYCGV PNMNVRQPAY DARGFMLDMA PVIAHPAYGG  240
FQYTDGYDAG RSSSQMQIPS NFNDNLAMWH TAEQCNAVVP ADWYTDLFAD DNSLYTAPGC  300
LGMGGGGDAM NYVDCNDMQY CSSNDLQWSG TSTGQNSWNI DGLHYLRAPA ILDVVDGRRN  360
ELMFATPPPM VAEQIFPADE KGDMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g70942.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755040.11e-136uncharacterized protein LOC104583363
TrEMBLA0A0Q3HK220.0A0A0Q3HK22_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1278735