PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69900.3.p
Common NameBRADI_1g69900, LOC100834134
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 204aa    MW: 22627.9 Da    PI: 8.7243
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1359.3e-4261531162
             YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                       +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l  ++ +    +++ + +            ++  ++ +   +  +++ +
  Bradi1g69900.3.p   6 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPPMVQPLSPN------------DH--HHPMGPFQGCTDCRR 84 
                       578999*************************************9866444444444444443............22..223333344444444 PP

             YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                       ++      s  +++ +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Bradi1g69900.3.p  85 NQPLPPLASPTSSDASPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 153
                       33333333566778899***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-4811154IPR006780YABBY protein
SuperFamilySSF470952.36E-899155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5108155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQQSSMDLVS PSEHLCYVRC TYCNTVLAVG VPCKRLMDTV TVKCGHCNNL SFLSPRPPPM  60
VQPLSPNDHH HPMGPFQGCT DCRRNQPLPP LASPTSSDAS PRAPFVVKPP EKKHRLPSAY  120
NRFMREEIQR IKAAKPDIPH REAFSMAAKN WAKCDPRCSS AVSASNSTSE PRSVVVPSPQ  180
LQERSNEQVV ESFDIFKQME RSG*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702690.0AB470269.1 Triticum aestivum TaDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228969.11e-149protein DROOPING LEAF isoform X2
SwissprotQ76EJ01e-116YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLI1H8271e-148I1H827_BRADI; Uncharacterized protein
STRINGBRADI1G69900.11e-146(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-51YABBY family protein