PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69900.1.p
Common NameBRADI_1g69900, LOC100834134
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 206aa    MW: 22869.2 Da    PI: 8.7243
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY128.96.9e-4061551162
             YABBY   1 advfssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                       +d++s se++Cyv+C++Cnt+la  v vP + l+ +vtv+CGhC +l  ++ +    +++ + +            ++  ++ +   +  +++
  Bradi1g69900.1.p   6 MDLVSPSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPPMVQPLSPN------------DH--HHPMGPFQGCTDC 84 
                       578999***************9744778*****************9866444444444444443............22..2233333444444 PP

             YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                        +++      s  +++ +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Bradi1g69900.1.p  85 RRNQPLPPLASPTSSDASPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 155
                       4433333333566778899***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.8E-4611156IPR006780YABBY protein
SuperFamilySSF470952.49E-8101157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5110157IPR009071High mobility group box domain
CDDcd013901.94E-5117158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MQQSSMDLVS PSEHLCYVRC TYCNTVLALQ VGVPCKRLMD TVTVKCGHCN NLSFLSPRPP  60
PMVQPLSPND HHHPMGPFQG CTDCRRNQPL PPLASPTSSD ASPRAPFVVK PPEKKHRLPS  120
AYNRFMREEI QRIKAAKPDI PHREAFSMAA KNWAKCDPRC SSAVSASNST SEPRSVVVPS  180
PQLQERSNEQ VVESFDIFKQ MERSG*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5454360.0AF545436.1 Triticum aestivum CRC-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558497.11e-151protein DROOPING LEAF isoform X1
SwissprotQ76EJ01e-114YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLI1H8251e-149I1H825_BRADI; Uncharacterized protein
STRINGBRADI1G69900.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-49YABBY family protein