PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g69480.1.p | ||||||||
Common Name | BRADI_1g69480, LOC100821963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 678aa MW: 72908.7 Da PI: 6.4105 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90 | 2.2e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Bradi1g69480.1.p 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.4 | 5.2e-26 | 18 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+p+ + +l+q+l + +y +++++++++ al +l+e++ +D+i+ D+ mp+mdG++ll+ e++lp+i+++a + + + + +k Bradi1g69480.1.p 18 VLVVDDDPTCLAVLKQMLVQCRY-DATTCSQSTRALSMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIK 108 89*********************.***************99999********************87754.558******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + Bradi1g69480.1.p 109 HGACDYLIKPVRMEELKN 126 ***************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.2E-178 | 2 | 662 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.27E-35 | 15 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-41 | 15 | 150 | No hit | No description |
SMART | SM00448 | 2.9E-29 | 16 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.585 | 17 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.8E-23 | 18 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.30E-26 | 19 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-30 | 199 | 260 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.523 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-19 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.7E-7 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 678 aa Download sequence Send to blast |
MAPPEEAGGG EFPVGMKVLV VDDDPTCLAV LKQMLVQCRY DATTCSQSTR ALSMLRENRR 60 GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR 120 MEELKNIWQH VVRKKFSGNK EHEHSGSLDD TDRNRPANND NEYASSINDG ADDSWKSQKK 180 KRDKEEDDSE LESGDPSNSS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG 240 LTRENVASHL QKFRLYLKRI AQHHAGITNP YCTPASSAQV ASLGGLDFQA LAASGQIPPQ 300 ALAALQDELL GRTTTSMVLP GRDQSSLRLA AVKGNKPQGE REIAFGQPIF KCQNNSYGAF 360 PQSSPTVGRL PSFSAWPNNK LGMADSTSTL GNVNNSQNSN IVLHELQQQP DTMLSGTLHA 420 LDVKPSGIAM PSQSLNTFPA SEGLSPNQSG FLTTIPPSMK PEPALPNSQQ SNNLLGGIDL 480 INQASTSQPF SNSHGGNLPG LMNHNSNVMP SQGISNFQTG NIPYLVNNSS IGVGSKPPGV 540 LKTESTDSLN QSFGYICGSS PMDSGLLSSQ PRNAQFGFLQ SPNDVTGGWS LQNVDNYRNT 600 IGPSHPVSSS SSFQSSNVAL GKLPDQGRGK NLGFVGKGTC IPNRFAVDEV ESPTNSLSHS 660 IGSSGDIPDI FGFSGQM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-24 | 199 | 261 | 2 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g69480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU136271 | 0.0 | KU136271.1 Lolium perenne type-B response regulator ARR2 (ARR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558456.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 0.0 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | I1H7X3 | 0.0 | I1H7X3_BRADI; Two-component response regulator | ||||
STRING | BRADI1G69480.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5796 | 37 | 54 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16857.1 | 1e-112 | response regulator 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g69480.1.p |
Entrez Gene | 100821963 |