PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g69209.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 630aa MW: 67576.3 Da PI: 7.605 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.7e-16 | 280 | 339 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g ++ ++++lg ++ +++Aa+a++ a++k++g Bradi1g69209.7.p 280 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqtRKgRQVYLGGYDNEDKAARAYDLAALKYWG 339 78*******************988898888446**********99*************98 PP | |||||||
2 | AP2 | 46.8 | 7.1e-15 | 382 | 433 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Bradi1g69209.7.p 382 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 433 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.98E-20 | 280 | 347 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-16 | 280 | 349 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.9E-12 | 280 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 281 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 281 | 353 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-16 | 281 | 348 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 282 | 293 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 382 | 442 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-10 | 382 | 433 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.05E-24 | 382 | 443 | No hit | No description |
SMART | SM00380 | 6.6E-33 | 383 | 447 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 383 | 441 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 383 | 441 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 423 | 443 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MRAMASGGNW LGFSLSPNMA MEVPSSSEPE HAHPHPLPPP PASGAISASP ANAATCNFLF 60 SAPSQMAAPP PGYYYVGGAY GDGSSTAGVY YSHHPVMPIT SDGSLCIMEA MMPSSSPKLE 120 DFLGGGNGGG SHDTATYYSH QHGQQEEASR FYQQHQQLVP YNFQHLTEAE MYQQAATAPM 180 EEAMAAAKNL LVTSYGSSCY SNVGMQPLSL SMSPGSQSSS CVSAAPQQHQ MAAAASVAAS 240 QGGSNGGGEQ CVGKKRGTGK GGQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD 300 NSCKKDGQTR KGRQVYLGGY DNEDKAARAY DLAALKYWGP STHTNFPLET YREDVEVMKS 360 MTRQEFVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFTTQEEA 420 AEAYDVAAIK FRGLNAVTNF DITRYDVDKI MESNSLLPGD EARKVKAVDA ANDLLAIQNS 480 GSQLYPAEER SSTGGTDWRM VLHGTPQQAA PCAEVTDLRK GIMGGPHSSL HGIAGFDIVS 540 AAHDIDVPGK ISGEVNYSNS SSLVTSLSNS REGSPERLGL AMLHAKHPNA ANLATMSPWM 600 AMPVPAVTHA MRAPNNISHV PLFAAWADA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g69209.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558439.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-146 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2K2DU87 | 0.0 | A0A2K2DU87_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G69207.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-113 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g69209.7.p |