PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69209.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 631aa    MW: 67663.4 Da    PI: 7.605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69209.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.6e-14280340155
               AP2   1 sgykGV.rwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV ++++++gr++A+++d  ++ +g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Bradi1g69209.4.p 280 SQYRGVtSRHRWTGRYEAHLWDnSCKkDGqtRKgRQVYLGGYDNEDKAARAYDLAALKYWG 340
                       78*****9**************988898888446**********99*************98 PP
2AP246.87.1e-15383434155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bradi1g69209.4.p 383 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 434
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.23E-19280348No hitNo description
PfamPF008475.1E-10280340IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14280350IPR016177DNA-binding domain
PROSITE profilePS5103219.019281348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15281349IPR001471AP2/ERF domain
SMARTSM003806.3E-26281354IPR001471AP2/ERF domain
PfamPF008476.0E-10383434IPR001471AP2/ERF domain
CDDcd000185.90E-24383444No hitNo description
SuperFamilySSF541719.81E-18383443IPR016177DNA-binding domain
PROSITE profilePS5103219.072384442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18384442IPR001471AP2/ERF domain
SMARTSM003806.6E-33384448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MRAMASGGNW LGFSLSPNMA MEVPSSSEPE HAHPHPLPPP PASGAISASP ANAATCNFLF  60
SAPSQMAAPP PGYYYVGGAY GDGSSTAGVY YSHHPVMPIT SDGSLCIMEA MMPSSSPKLE  120
DFLGGGNGGG SHDTATYYSH QHGQQEEASR FYQQHQQLVP YNFQHLTEAE MYQQAATAPM  180
EEAMAAAKNL LVTSYGSSCY SNVGMQPLSL SMSPGSQSSS CVSAAPQQHQ MAAAASVAAS  240
QGGSNGGGEQ CVGKKRGTGK GGQKQPVHRK SIDTFGQRTS QYRGVTSRHR WTGRYEAHLW  300
DNSCKKDGQT RKGRQVYLGG YDNEDKAARA YDLAALKYWG PSTHTNFPLE TYREDVEVMK  360
SMTRQEFVAH LRRRSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFTTQEE  420
AAEAYDVAAI KFRGLNAVTN FDITRYDVDK IMESNSLLPG DEARKVKAVD AANDLLAIQN  480
SGSQLYPAEE RSSTGGTDWR MVLHGTPQQA APCAEVTDLR KGIMGGPHSS LHGIAGFDIV  540
SAAHDIDVPG KISGEVNYSN SSSLVTSLSN SREGSPERLG LAMLHAKHPN AANLATMSPW  600
MAMPVPAVTH AMRAPNNISH VPLFAAWADA *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69209.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313663.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ389141e-144ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K2DU760.0A0A2K2DU76_BRADI; Uncharacterized protein
STRINGBRADI1G69207.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-111AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]