PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g68800.1.p | ||||||||
Common Name | BRADI_1g68800, LOC100828563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 27268.8 Da PI: 8.3042 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.6e-15 | 26 | 75 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 W++eEd ll + v+++G +W+++a+ + ++Rt k+c++rw+++l Bradi1g68800.1.p 26 MWSEEEDRLLRQQVRLHGAQSWDKVAEALEqalpNNRTSKSCRLRWYQHL 75 5**********************************************996 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.1e-15 | 84 | 126 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T +Ed+l++++ + +G++ W+tIa + gRt++ +k+rw+++ Bradi1g68800.1.p 84 PFTRDEDKLIIHYQAIHGNR-WSTIAGFLS-GRTDNAVKNRWNSV 126 89******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.263 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 23 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-14 | 23 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.52E-28 | 23 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-14 | 26 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-13 | 27 | 75 | No hit | No description |
SMART | SM00717 | 4.6E-12 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-12 | 84 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-11 | 84 | 127 | No hit | No description |
PROSITE profile | PS51294 | 15.125 | 84 | 131 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 84 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASTPGTSGS GGGGHPPHRH VSKKTMWSEE EDRLLRQQVR LHGAQSWDKV AEALEQALPN 60 NRTSKSCRLR WYQHLDPKVD AVKPFTRDED KLIIHYQAIH GNRWSTIAGF LSGRTDNAVK 120 NRWNSVLKCH ARASSSAERP RAPCAAARNA ACAELTQGCL SLFPLASGDV RQHGSRPSPG 180 VFMPLASEED VSDVETGACL ELFPMAPGDI RSNAGAAASK GMSCGAGDPL TELRLGSAAV 240 VVFDVMPLQA YPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 27 | 128 | 10 | 105 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g68800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561848.1 | 0.0 | transcription factor MYB23 | ||||
TrEMBL | I1H7P1 | 0.0 | I1H7P1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G68800.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-27 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g68800.1.p |
Entrez Gene | 100828563 |