PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g68730.1.p

Common Name

BRADI_1g68730, LOC100827246

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 431aa MW: 45534.3 Da PI: 9.0331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g68730.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7.2e-07	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Bradi1g68730.1.p 78 YVCEICGQGFQREQNLQMHRRRH 100 9*********************9 PP
2	zf-C2H2	10.8	0.0016	185	207	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ Bradi1g68730.1.p 185 WVCARCAKGYAVQSDYKAHLKTC 207 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.57E-7	77	100	No hit	No description
SMART	SM00355	6.5E-4	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.759	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	149	179	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.57E-7	180	205	No hit	No description
SMART	SM00355	270	185	212	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MALAVKSHHQ MLASSSTSSS SPSSQPLPPP PPAATSSSCL PADQPSPAKR KRRPPGTPDP 60 DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA ATTAGTTDQD 120 GGGGGTASAG GTGGGAAAAA STVPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG 180 GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRMRA 240 EAVPSTVALP VIRPAVLSRP PPPPSELQLL PAAATKPPLA ATPVFSATTH AATATTTTKL 300 ELSIGRDDHD HEEGEEEEAM RRAMEEKAAA DGERERAREE AAAAERALEE ARRARHHARG 360 ELEAACALRD HAARLLAQVT CHACRQQRSF ADAAGVHVVV SMGVAGGEGH GGSAAAREAL 420 MVRARGGLGL *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MALAVKSHHQ MLASSSTSSS SPSSQPLPPP PPAATSSSCL PADQPSPAKR KRRPPGTPDP  60
DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA ATTAGTTDQD  120
GGGGGTASAG GTGGGAAAAA STVPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG  180
GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRMRA  240
EAVPSTVALP VIRPAVLSRP PPPPSELQLL PAAATKPPLA ATPVFSATTH AATATTTTKL  300
ELSIGRDDHD HEEGEEEEAM RRAMEEKAAA DGERERAREE AAAAERALEE ARRARHHARG  360
ELEAACALRD HAARLLAQVT CHACRQQRSF ADAAGVHVVV SMGVAGGEGH GGSAAAREAL  420
MVRARGGLGL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-16	181	235	3	57	Zinc finger protein JACKDAW
5b3h_F	1e-16	181	235	3	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g68730.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376150	1e-140	AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003561843.1	0.0	protein indeterminate-domain 16
Swissprot	Q9C9X7	1e-108	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	I1H7N3	0.0	I1H7N3_BRADI; Uncharacterized protein
STRING	BRADI1G68730.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-85	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Bradi1g68730.1.p
Entrez Gene	100827246

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]