PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68570.2.p
Common NameBRADI_1g68570
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 290aa    MW: 30333.8 Da    PI: 6.7823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68570.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029115137123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C + F ++  L  H++ H
  Bradi1g68570.2.p 115 FTCNYCQRKFFSSQALGGHQNAH 137
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-6112142No hitNo description
PROSITE profilePS5015711.323115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLFYPCTLVL LMTYLLYSGD LEIGKQGLRF ERDCSGMKSS NSFLRQQEPC DDQLSLSDIS  60
SQAASNSSSA GPPLALDLSL AAAAATESST TDSNGSGGSK AAAATAGARE PTRVFTCNYC  120
QRKFFSSQAL GGHQNAHRRE RTLARRAVHH RLDAFPYGYA DVASLPLYGS PGLYHPIGIQ  180
AHASAHRQGL LASAERQQHQ QEVVVAAAAE ARPGRALLGP MPFLVGGGEE EASCFGTWPG  240
SFRAPAGGVL FTPDARAFHS GSSNLGGGGS SSGSALVQAD EEPDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g68570.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751191e-72AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312413.10.0zinc finger protein 4 isoform X1
TrEMBLA0A0Q3HII50.0A0A0Q3HII5_BRADI; Uncharacterized protein
STRINGBRADI1G68570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-25zinc-finger protein 1