PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g68510.2.p | ||||||||
Common Name | BRADI_1g68510, LOC100825142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 748aa MW: 82499.2 Da PI: 5.4904 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 43 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + q++++++ + Bradi1g68510.2.p 43 AWTHQEEESFFNALRQVGKN-FEKITLRVQ-SKNKDQVRHYYYRL 85 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-9 | 35 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-5 | 38 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.686 | 39 | 90 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-5 | 40 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-5 | 43 | 86 | No hit | No description |
Pfam | PF00249 | 4.2E-6 | 43 | 85 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MEKEASEEMS PPPQPVDFPL ATLLRASDPD QKPAKKPTRQ WAAWTHQEEE SFFNALRQVG 60 KNFEKITLRV QSKNKDQVRH YYYRLVRRMK KILGPEFSLD ARNSKDTIAA MLRWWSLLEK 120 FSCSASKLHL RPRRMKTFVE TLGNQLLKDR KRTRRKCPQG DMYLASSPIL SKTPGNQSSS 180 VELLPMDAQD GSIVAYSKGA FSKRVVETNS NRSGAIKGDL SATRTVKQKR RAGGVGATAA 240 YKKWERAAMA GVSLVADAAE EIERSIVTQN LCNVDARPLA SSSNNVATVE AIGTNQIKEA 300 DPQAPSKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KMSSVLEHLN RKWGNSNIAC 360 GELVLFPYCA HQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS LAELEAGVSE 420 ISLTHFENCM IPEDVQVKSS SEACAQKDST SLGGFTSEHP SCNSNDQSSL LLGTPSSTDK 480 NAEEEQSTNV SPSQSGSQHQ EQVPDQATEV YQGMKCVAMS EVEWADTLTD ISVGYLLTEA 540 SKGAKLDCPG TSSVKNALLD NSCSYDSFDA AVALHTSRYQ VAEQSAHTSH SNIWGAEETC 600 DEFSFKSAAG RKQEGSNTLA GSPPDSDNEV HSPNSEGFRG FLEDLAGGEV ADNPCIYDVK 660 DIELCAISLP QNDKDSGLKD QSLADIYWPD SLGPLDLEIP STRYQPEDFF LGDSQNSWGR 720 MMASSLDAFR NLSFFTSDKN DSIPPIM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g68510.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228893.1 | 0.0 | TSL-kinase interacting protein 1 | ||||
TrEMBL | I1H7K7 | 0.0 | I1H7K7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G68510.2 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5478 | 36 | 43 | Representative plant | OGRP2164 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 1e-168 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g68510.2.p |
Entrez Gene | 100825142 |