PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67910.1.p
Common NameBRADI_1g67910
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 91aa    MW: 9793.47 Da    PI: 5.0873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09246344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +W++ E e++  a + + ++   +W+++a+ +g g+t+ +++ ++
  Bradi1g67910.1.p  2 AWSEAENERFESALATYDPDmagRWERVAAAVGGGKTADDVRRHF 46
                      7*****************99************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002499.0E-8146IPR001005SANT/Myb domain
PROSITE profilePS512939.214154IPR017884SANT domain
CDDcd001672.47E-6246No hitNo description
Gene3DG3DSA:1.10.10.605.3E-4246IPR009057Homeodomain-like
SuperFamilySSF466892.12E-9354IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAWSEAENER FESALATYDP DMAGRWERVA AAVGGGKTAD DVRRHFDLLT EHVGDIESGR  60
YGYPDNNGAA NNGTAGTNHR TNGRANRPQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-143871188RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313364.11e-60protein RADIALIS-like 3
SwissprotQ6NNN02e-19RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1H7D63e-59I1H7D6_BRADI; Uncharacterized protein
STRINGBRADI1G67910.15e-60(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-18RAD-like 1