PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67740.1.p
Common NameBRADI_1g67740, LOC100841807
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 677aa    MW: 75072.3 Da    PI: 6.5922
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1872.7e-2738128188
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                       +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +   +++++++r+ tr+gCka++++kk   +kw+vtk++++HnH 
  Bradi1g67740.1.p  38 DFYSIYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNGEgshADQKQQERTGTRVGCKAMIMIKKIGPSKWVVTKFVKNHNHG 128
                       6******************************************999888899999***********************************7 PP
2FAR189.16.4e-28175268190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l
  Bradi1g67740.1.p 175 SFYINYASLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRPKKemtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSL 267
                       59****************************************999998988889999**********************************99 PP

              FAR1  90 a 90 
                        
  Bradi1g67740.1.p 268 L 268
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2438129IPR004330FAR1 DNA binding domain
PfamPF031015.1E-26175268IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
METSSHDPEA ENIIGHEDDT EFTPCEGMEF ESEDAARDFY SIYARNAGFR IRISRYTRSR  60
RDNSIISRRI VCSKEGFHET RNGEGSHADQ KQQERTGTRV GCKAMIMIKK IGPSKWVVTK  120
FVKNHNHGAV PPKKTDVRSV DQDPSPMEKP NSIDVDPIEE PVEGMEFDTE EAAKSFYINY  180
ASLNGFRARI SRYCRSRRDN SIISRQIVCS KEGFREVRPK KEMTDEGKTK RPRMITRVGC  240
KAMIVVKKMN SGKWMVSKFE KEHNHSLLSS KPVHCTSNIT SGEVGEFAAK SSDPTEMKFE  300
EYSAGVQCNS TDSLTVLYNN LCQEAMKFAK EGSVTEEIYH VAVSALKEAT EKVAQVKRCH  360
PMMPQRVVSV SENKHKVLYM KTMYASQCSD EVKQKIAPSQ LKLFQEPTSN PVLIPTNLVT  420
DSGLSNSDDN SPFSRAFPTN EGHGRDGSEC SYLHSENKYD DSSKKYQNSS SNQATQGKHE  480
SFHGPSEETT VAIPAIPLTL YMPVMRNSPG ASADGLYKVL AAPIEAVPIS YRPAEPIRQP  540
ERNFCNLGPL PGVLSALNRR GNGPNPLVHA TALACGARVV PLEEAASLIK VIESKIRSGE  600
ATIARLPSSS LMPLVPEAVS MSSSSEDDEE NDHGEPLMGN AKVNCHNDQS SEEMKLQGEQ  660
SELETESENC SPHPEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752890.10.0uncharacterized protein LOC100841807
TrEMBLI1H7B90.0I1H7B9_BRADI; Uncharacterized protein
STRINGBRADI1G67740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Representative plantOGRP1184056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-30FAR1 family protein