PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g67230.1.p
Common NameBRADI_1g67230, LOC100821543
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 465aa    MW: 49324.9 Da    PI: 9.0583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g67230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036212235123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ Cg++ s + +L+ H  t H
  Bradi1g67230.1.p 212 FPCKSCGEVLSKPQQLELHRATkH 235
                       89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.746212240IPR007087Zinc finger, C2H2
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-10238463No hitNo description
Gene3DG3DSA:3.90.228.101.8E-8241463IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAGGGSRSSL LRGFLSLFFV MFLHIGHAAC CFSPGSASQQ HEEDAADADG KGTGVGSSSS  60
IIKRRKISPL AFSPAASSST VAVEERSRAR RSRRHVSSLA SNLRCYLHRI FSSGPNNNAG  120
QPAGEEEDAA TLTTTMSSPL PQPSSMTMTP QRHQAATSSV VLSMPSSPCG PSSPFLYSQS  180
PMSPRSLSVT PPVPCSPARR LSRSFAARGD LFPCKSCGEV LSKPQQLELH RATKHGSLSE  240
LSSLDSSTNI IRMIFLAGWK QSPPSPPAVA VRRVLRIHHN PRALARFEEY RDLVRARAAR  300
RRSSAVLGAE EEERCIADGN ERLRFHCATA LCSQLGSGGG GGGVCGSPYC CACTILRHGF  360
GGKQADVDGI ATYSSGWAAH ASLPDEVERE FAFLQVRRAM LVCRVVAGRV VRGAAAGDDD  420
KVAYDSMVPV AADGGGRRGE GDADQLLVFN PRAVLPCFVI MYSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g67230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558290.10.0uncharacterized protein LOC100821543
TrEMBLI1H7610.0I1H761_BRADI; Uncharacterized protein
STRINGBRADI1G67230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.15e-42C2H2 family protein