PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g65238.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 368aa MW: 39242.2 Da PI: 6.6347 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 63 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ + +G+g+W++++++ g++R++k+c++r+ +yl Bradi1g65238.2.p 63 KGLWTPEEDAKLLAYTSNHGTGNWTSVPQRAGLKRCGKSCRLRYTNYL 110 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 118 | 159 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++ Bradi1g65238.2.p 118 SFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 159 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 54 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.794 | 58 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-29 | 60 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-13 | 62 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-15 | 63 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.81E-10 | 66 | 110 | No hit | No description |
PROSITE profile | PS51294 | 25.04 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-15 | 115 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 115 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-12 | 118 | 161 | No hit | No description |
Pfam | PF00249 | 5.0E-15 | 118 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MLLPCVHFSR FSPYMYYHYH PRSDLAGQGG TGVWCLVLDR KGEETRRGSM GRPPCCDKAN 60 VKKGLWTPEE DAKLLAYTSN HGTGNWTSVP QRAGLKRCGK SCRLRYTNYL RPNLKHESFT 120 QEEEELIVTL HAMLGSRWSL IANQLPGRTD NDVKNYWNTK LSKKLRQRGI DPLTHRPIAD 180 LMQSIGTLAI RPPPAAAASS SSPYFPINNP AAPPPLPLLQ DDDVSYHAAL QQKQEVITLL 240 DADAPGAAAS PDHHHHQQLK WSDFLADDAA AALEAAAPPA QFQEAAAVAG GGGLSARACG 300 GDIGGGVGIG GGGAGDDGAA SSAFIDAMLD SDRKMGVDQL IAELLADPAY CYGACCGSSS 360 SEMGWGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 63 | 165 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g65238.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372736 | 0.0 | AK372736.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010N13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558134.2 | 0.0 | myb-related protein Zm38 | ||||
TrEMBL | A0A2K2DTG4 | 0.0 | A0A2K2DTG4_BRADI; Uncharacterized protein | ||||
STRING | OB03G23760.1 | 1e-142 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11874 | 34 | 39 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 9e-66 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g65238.2.p |