PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g63690.2.p

Common Name

BRADI_1g63690

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 273aa MW: 30272.2 Da PI: 7.4393

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g63690.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34	6.3e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 ++lm+v+gLtl+h+kSHLQkYRl Bradi1g63690.2.p 1 MRLMGVPGLTLYHLKSHLQKYRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-10	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	1.3E-25	69	116	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRLMGVPGLT LYHLKSHLQK YRLSKNLHAQ ANVGNSRNVV GCTMATEKHS EGNGSPVSHH 60 LGAQTNKSMH IGEALQMQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQSVL EKAHETLAKQ 120 NTGSASLENA KMQLSELVSK VSTECLHNAF TGFEEIQGSQ MLQTMQLGDG SVDSCLTACE 180 SQRDQDILSI SLSAKKGKEI GAMAFDLHMK EGHGNLFLEK LSRRPPNHQE GHERTDGFSI 240 SCQTTKLDLN INETNDGPQN CKKFDLNGFS WT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g63690.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558005.1	0.0	myb-related protein 2
Swissprot	Q9SQQ9	5e-70	PHL9_ARATH; Myb-related protein 2
TrEMBL	I1H5Y3	0.0	I1H5Y3_BRADI; Uncharacterized protein
STRING	BRADI1G63690.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-72	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi1g63690.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]