PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g63680.2.p
Common NameBRADI_1g63680, LOC100836994
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 327aa    MW: 33596.2 Da    PI: 7.4381
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g63680.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.8e-153595257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Bradi1g63680.2.p 35 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 95
                      89*****************99*************************************997 PP
2Wus_type_Homeobox106.81.3e-343497265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
   Bradi1g63680.2.p 34 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 97
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1431103IPR009057Homeodomain-like
PROSITE profilePS5007111.243196IPR001356Homeobox domain
SMARTSM003891.2E-633100IPR001356Homeobox domain
PfamPF000465.3E-133595IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-835102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEGSSNSPDG GQSSGGSPPE ERGRSGGGRG DQPVRSRWTP KPEQILILES IFNSGMVNPP  60
KDETVRIRKL LERFGAVGDA NVFYWFQNRR SRSRRRQRQM QAAAAAAAAA NNNNTSSAAA  120
ASATIGGQLP SAMAIVGGSA CQYEQQASSS SSSGSTGGSS SLGLFAHGAA GVSSSGPGAG  180
VGYQQLLQQQ QAASCGASLS ALANSGLMVG DVGDSGGGDD LFAISRQMGF VDHSPVGSSN  240
SSAAPSTAVQ QQQQYFSCQL PTATITVFIN GVPMEVPRGP IDLRAMFGQD VVLVHSTGAL  300
LPVNDYGILI QSLQMGESYF LVARQT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g63680.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370701e-103AC137070.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence.
GenBankAK0632621e-103AK063262.1 Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence.
GenBankAK1110001e-103AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence.
GenBankAP0149591e-103AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-103CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558004.10.0WUSCHEL-related homeobox 6
SwissprotA2XG771e-102WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBLA0A0Q3KBW00.0A0A0Q3KBW0_BRADI; Uncharacterized protein
STRINGBRADI1G63680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Representative plantOGRP1277145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.22e-30WUSCHEL related homeobox 12