PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g63600.1.p | ||||||||
Common Name | BRADI_1g63600, LOC100835143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 37757.6 Da PI: 9.3377 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.8e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++ Bradi1g63600.1.p 9 LPPGFRFHPTDEELILHYLRNRAAESPCPV-SIIADVDIYKFDPWALPSKANYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPIR 100 79****************************.89***************999999*************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++e vg+kk Lvfykgr pkg+kt+W+mheyrl Bradi1g63600.1.p 101 SSaTSESVGVKKALVFYKGRPPKGVKTNWIMHEYRL 136 9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-63 | 5 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.655 | 9 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MIMSDPAMLP PGFRFHPTDE ELILHYLRNR AAESPCPVSI IADVDIYKFD PWALPSKANY 60 GDREWYFFTP RDRKYPNGVR PNRAAGSGYW KATGTDKPIR SSATSESVGV KKALVFYKGR 120 PPKGVKTNWI MHEYRLAAAD AHAGNTYRPM KFRNTSMRLD DWVLCRIYKK TSQMSPMAVP 180 PLSDHEHDEP CAYGGASSAG MVMQGGAAYP GHALAGTQRM PKIPSISELL NEYSLAQLLD 240 EGGAGDIAAR PDQHAAFLGH PIMNQYLVNS SGSNNNNMSQ LAQTAAGGEG AAGKRKRSEH 300 GGDNGLTSQQ AADKKPNGSC FGATTFQIGS NPLQGSLAPG NQRLLHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-70 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-70 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-70 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-70 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-70 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-70 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-70 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g63600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251058 | 0.0 | AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557998.1 | 0.0 | NAC transcription factor NAM-B1 | ||||
TrEMBL | I1H5X2 | 0.0 | I1H5X2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G63600.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 4e-85 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g63600.1.p |
Entrez Gene | 100835143 |