PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g61525.1.p | ||||||||
Common Name | BRADI_1g61525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23946.3 Da PI: 9.2626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.3 | 8e-29 | 18 | 167 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatg 87 lppG++F Pt++elvv+yL++k++g + l +++ +++++ P+++ k++e+ wyfF+kr +ky+tg+++nr+t +g+W+atg Bradi1g61525.1.p 18 LPPGYHFAPTENELVVHYLRRKIAGLQPLLPIFFDVDNLNSYRPEQIVGtladkYRKHGEDCWYFFTKRVRKYSTGNHPNRTTPgKGFWNATG 110 79*************************76645566669*********7335663333466699******************77659******* PP NAM 88 kdkevlskkgelvglkktLvfy..................kgrapkgektdWvmheyr 127 + +++ ++el g +tLvfy + +k kt+W+m ey+ Bradi1g61525.1.p 111 PWRLIHV-DKELAGRVRTLVFYtepekeeqvapglkemddQTALSKLAKTSWIMYEYE 167 ******9.999***********88877776666665544334556667*********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-36 | 13 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.224 | 18 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-19 | 19 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEVAPASTEH QRRFMLKLPP GYHFAPTENE LVVHYLRRKI AGLQPLLPIF FDVDNLNSYR 60 PEQIVGTLAD KYRKHGEDCW YFFTKRVRKY STGNHPNRTT PGKGFWNATG PWRLIHVDKE 120 LAGRVRTLVF YTEPEKEEQV APGLKEMDDQ TALSKLAKTS WIMYEYENLT SQAEAEDKNI 180 DKIDEWVLCT IQKRRRCNGK EKGRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-24 | 16 | 200 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-24 | 16 | 200 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-24 | 16 | 200 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-24 | 16 | 200 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-24 | 16 | 200 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-24 | 16 | 200 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-24 | 16 | 200 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g61525.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230150.1 | 1e-135 | NAC domain containing protein 50 | ||||
TrEMBL | A0A0Q3HGB1 | 1e-153 | A0A0Q3HGB1_BRADI; Uncharacterized protein | ||||
STRING | EMT33773 | 6e-61 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15867 | 13 | 13 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 9e-29 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g61525.1.p |