PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g60106.1.p | ||||||||
Common Name | BRADI_1g60106, LOC100821467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 29518.1 Da PI: 6.3469 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ede+lv +++++G g W + +++ g++R++k+c++rw++yl Bradi1g60106.1.p 14 RGAWTAMEDEILVSYINRHGEGKWGSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ Bradi1g60106.1.p 67 RGNISDDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.082 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.689 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRKPCCSKE GLNRGAWTAM EDEILVSYIN RHGEGKWGSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEEELIVR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKRMLLTA 120 RGTNQQQQQA STPKPPHSSS VDAPPDHPDT SSSPIRTKAT RCTAMLPAHH DPIADQVVQE 180 TTTTHIEQQQ RGLDGDEDLS IELDFEGIEL GFLLSPWRVS ADGDRHELGD CGTHEADLEE 240 LLGLGPDGAQ SHGGVPSLGD LELPWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g60106.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB191459 | 2e-53 | AB191459.1 Triticum aestivum Tamyb10-B1 gene, complete cds. | |||
GenBank | AB599722 | 2e-53 | AB599722.1 Triticum aestivum Tamyb10-B1 gene for myb-related protein, complete cds. | |||
GenBank | HE996776 | 2e-53 | HE996776.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_66711. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561552.1 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | A0A0Q3HEZ4 | 0.0 | A0A0Q3HEZ4_BRADI; Uncharacterized protein | ||||
STRING | Si038905m | 4e-85 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-61 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g60106.1.p |
Entrez Gene | 100821467 |