PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g59750.1.p | ||||||||
Common Name | BRADI_1g59750, LOC104582350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 27733.3 Da PI: 9.3728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Bradi1g59750.1.p 61 YTCTFCRREFRSAQALGGHMNVH 83 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.59E-6 | 58 | 88 | No hit | No description |
SMART | SM00355 | 0.0066 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.9E-5 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAANYYWAGM WGGGGGGAST TTTTTTTTLV RSSFPAAAEA PSWEEQAFAR DVGCVWPPRS 60 YTCTFCRREF RSAQALGGHM NVHRRDRARL RQCASPPAPA PDDLHHHQQQ LTIPSPKSPQ 120 PATVTTTRAS PNNSYISTIL SAADKEIIIS NNNSNTKVFL SMPVFDATAR LDQSTDEERI 180 CRKRRRVDQQ PPAMVALPFF VRRRSPMPCE REEADHHGHA KVPKVMVSSP SPLHLALGRQ 240 EVDLELRLGT S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 56 | 83 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 56 | 83 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 185 | RKRRR |
2 | 182 | 186 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g59750.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005869 | 8e-37 | AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12. | |||
GenBank | AP014963 | 8e-37 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 8e-37 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | CT836111 | 8e-37 | CT836111.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103M23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230127.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | I1H4I8 | 0.0 | I1H4I8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G59750.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-25 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g59750.1.p |
Entrez Gene | 104582350 |