PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g59250.1.p | ||||||||
Common Name | AP1, BRADI_1g59250, LOC100845222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 279aa MW: 31748.9 Da PI: 9.6469 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.6 | 5.9e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevav++fs++gklyey++ Bradi1g59250.1.p 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVVVFSPKGKLYEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 110.3 | 2.1e-36 | 78 | 173 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + s+e++ + ++++e++kLk++ie++q+ ++hl+GedL+sL+lkeLqqLeqqLe+slk+iRs+K++l++e+i+elqkke++lqeenkaL+k Bradi1g59250.1.p 78 KALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLDSLNLKELQQLEQQLESSLKHIRSRKSHLMMESISELQKKERSLQEENKALQK 170 556667888899********************************************************************************9 PP K-box 97 kle 99 +l Bradi1g59250.1.p 171 ELV 173 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.927 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-35 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.09E-42 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.1E-31 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.88 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVVVFSP KGKLYEYATD 60 SSMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA KIETIQKCHK HLMGEDLDSL 120 NLKELQQLEQ QLESSLKHIR SRKSHLMMES ISELQKKERS LQEENKALQK ELVERQKAAS 180 RQQQQQQQQQ QVQWEQHAHT QAQAHAQAQA QTQAQAQTSS SSSSFMMRDH QQARVPQQNI 240 CSYPPATMGG ESSSVAAPGQ GQIRIGGLPP WMLSHLNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g59250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ588324 | 0.0 | HQ588324.1 Brachypodium distachyon MADS-box (AP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266872.1 | 0.0 | MADS-box transcription factor 15-like | ||||
Swissprot | Q6Q9I2 | 1e-130 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | G9BIL0 | 0.0 | G9BIL0_BRADI; MADS-box | ||||
STRING | BRADI1G59250.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-74 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g59250.1.p |
Entrez Gene | 100845222 |