PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g58820.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 269aa    MW: 30122.8 Da    PI: 11.2425
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g58820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-08200247653
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +++k qle+Le+ + +++ p+ ++   + + ++L+ + + +WF  rR 
  Bradi1g58820.1.p 200 RLKKVQLETLERIYLRSKRPTNTMVSSIVQVTSLPRKTIVNWFEDRRE 247
                       67899*****************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.734192252IPR001356Homeobox domain
SuperFamilySSF466892.14E-9195250IPR009057Homeodomain-like
CDDcd000863.29E-7195246No hitNo description
SMARTSM003897.2E-4198256IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-8200247IPR009057Homeodomain-like
PfamPF000463.1E-6200247IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDGWVLPPPA VAGAAIRSWG AAGRRKPARA GRRKTAGRLK EEGAGDGGPA AKGLEKATEY  60
RRKRRRRTRG LLQRSMRERR WKICGANRNY RERRHPSLPI PLPSSAPSPV FLLVRAPPPQ  120
IKNLAGELGL DRGLVIELLR NPPPKLLLMS DSLPDEAPSK PQVEEIEPSP VVDEVDATET  180
KPQMDIPIHV MSAEWSTQKR LKKVQLETLE RIYLRSKRPT NTMVSSIVQV TSLPRKTIVN  240
WFEDRREQDG VPDHRAAYKR PLSETIAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRKRRRR
26165RKRRR
36167RKRRRRT
46168RKRRRRTR
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g58820.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1001381e-137FP100138.1 Phyllostachys edulis cDNA clone: bphyst013o11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751799.11e-100protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V52e-45OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0Q3NUE60.0A0A0Q3NUE6_BRADI; Uncharacterized protein
STRINGBRADI1G58817.11e-98(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107003542
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-47overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]