PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g58057.1.p | ||||||||
Common Name | BRADI_1g58057, LOC100827850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 36317.7 Da PI: 4.9977 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.4 | 1.5e-49 | 52 | 177 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diyk+eP+dLpk +v +++kewyfF+ r +ky+++ r+nr+t +g+Wkatg d++++ Bradi1g58057.1.p 52 PGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKEMDIYKHEPSDLPKtsTVGGGDKEWYFFCLRGRKYRNSVRPNRVTGAGFWKATGIDRPIH 143 9***************************.89**************95447777999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + vglkk+Lv+y+g+a kg+kt+W+mhe+rl Bradi1g58057.1.p 144 G-SAGIVGLKKSLVYYRGSAGKGVKTEWMMHEFRL 177 9.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.311 | 50 | 203 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-54 | 51 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-25 | 52 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MVVALKESIM GTMKMMQGDD NHGGSVVLEG GEVVVGEGEV LEEEEEEGVE LPGFRFHPTD 60 EELVTFYLRR KVAGKRLSIE IIKEMDIYKH EPSDLPKTST VGGGDKEWYF FCLRGRKYRN 120 SVRPNRVTGA GFWKATGIDR PIHGSAGIVG LKKSLVYYRG SAGKGVKTEW MMHEFRLPPN 180 TAVNSSPCFQ EAEVWTICRI FKRSVIYKKH PQQQQQHIAA AAPPPQQQQD SSSGVTGCGS 240 LESSDCTGEY AGNYEYTMNN NSMPAPAPAS GGAYYGGGQQ QYFQQGMQWN DGGAMQQPVS 300 DGDVWDDDIG RMVMELTDPS VFYDCTYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-47 | 42 | 209 | 6 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g58057.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561449.2 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-78 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0Q3HDM8 | 0.0 | A0A0Q3HDM8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G58057.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-76 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g58057.1.p |
Entrez Gene | 100827850 |