PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57607.1.p
Common NameBRADI_1g57607, LOC100821336
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 351aa    MW: 38419.2 Da    PI: 6.6551
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57607.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-102763112055
                       HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Bradi1g57607.1.p 276 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 311
                       4679*****************************885 PP
2ELK37.84e-13231252122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK qLl+KYsgyL+sL+qEFs
  Bradi1g57607.1.p 231 ELKYQLLKKYSGYLSSLRQEFS 252
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-2087131IPR005540KNOX1
PfamPF037903.8E-2188128IPR005540KNOX1
SMARTSM012562.0E-29133184IPR005541KNOX2
PfamPF037914.0E-24140183IPR005541KNOX2
PfamPF037894.2E-10231252IPR005539ELK domain
PROSITE profilePS5121311.627231251IPR005539ELK domain
SMARTSM011881.2E-7231252IPR005539ELK domain
PROSITE profilePS5007112.892251314IPR001356Homeobox domain
SuperFamilySSF466891.24E-19252325IPR009057Homeodomain-like
SMARTSM003894.4E-13253318IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-28256315IPR009057Homeodomain-like
CDDcd000862.96E-13263315No hitNo description
PfamPF059209.7E-17271310IPR008422Homeobox KN domain
PROSITE patternPS000270289312IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDQSSFGNIL GGGGGSSKAS FLQLQPLSPM GGGAYYGTPL ALHQAQQAAA AAVGGSSSSQ  60
YGHHQYSSSS SQRHGGSGAE ISAAEAEAIK AKIVAHPQYS ALLAAYLDCQ KVGAPPEVME  120
KLTAMAAKLP SPGHHEQRGD PELDQFMEAY CNMLAKYREE LTRPIEEAME FLKRVEAQLD  180
SITGAGHGGS SARLSLLADG KSEGVGSSED DMDVSGREDP PEIDPRAEDK ELKYQLLKKY  240
SGYLSSLRQE FSKKKKKGKL PKEARQKLLH WWELHYKWPY PSETEKIALA ESTGLDQKQI  300
NNWFINQRKR HWKPSEDMPF VMMEGFHPQN AAALYMDGQF MADGMYRLGS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57607.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557608.10.0homeobox protein knotted-1-like 12
SwissprotO650341e-163KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-163KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0Q3NTW80.0A0A0Q3NTW8_BRADI; Uncharacterized protein
STRINGBRADI1G57607.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-98KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]