PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57560.2.p
Common NameBRADI_1g57560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 609aa    MW: 63540.8 Da    PI: 7.6973
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57560.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-16274333155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a+++a++k++g
  Bradi1g57560.2.p 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDQAALKYWG 333
                       78*******************988886678446*************************98 PP
2AP251.72.1e-16378427355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  Bradi1g57560.2.p 378 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 427
                       9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-13274333IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-16274342IPR016177DNA-binding domain
CDDcd000183.31E-20274341No hitNo description
SMARTSM003805.5E-29275347IPR001471AP2/ERF domain
PROSITE profilePS5103218.913275341IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16275342IPR001471AP2/ERF domain
PRINTSPR003674.4E-6276287IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17376436IPR016177DNA-binding domain
CDDcd000183.53E-23376437No hitNo description
SMARTSM003801.7E-32377441IPR001471AP2/ERF domain
PROSITE profilePS5103218.979377435IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17377435IPR001471AP2/ERF domain
PfamPF008474.5E-11378427IPR001471AP2/ERF domain
PRINTSPR003674.4E-6417437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MTNDGSNGAA AAAASGWLGF SLSAPHMVDA HQHHHNQQQS HGGLFYPSPA AAAAAYGLGS  60
GDVGAVNTSL GYYSPQLASM PLKSDGSLCI MEALRRTSDN HHHQDNHHAG GPKLEDFLGA  120
AGQQQHALSL DNSSTFYYYG GAGNANANGG HQGFLQQQAY DVYGAAAAAE EESAATAAAM  180
ASWVQASQAQ LQLQQHPLAL SMSSGAGSLS SCVTLSGAEY GGGGVVGAGA GGEGGGGGGG  240
GRKRAGTAGN NSNNSKQQAV QHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  300
GQTRKGRQVY LGGYDMEEKA ARAYDQAALK YWGPSTHINF PLEDYAGEVE EMKKMSRQEY  360
VAHLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVSGN KDLYLGTFGT QEEAAEAYDI  420
AAIKFRGLNA VTNFDITRYH VDKIIASNTL LPAELAKRNP SNDPDPNSTL LLQDDASAAI  480
PAPPPAHDHQ TNAAAAAAFS AALHDLVAVQ GGNGNGNVRM AAAMSAAAAA SSSSLVTSSL  540
SNSRGDDEIS PDRAAGGLSS MLFAAKQQQP KLMSASSWAA SSSPASARPA PAAVSIAHMP  600
MFAAWGDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57560.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-147BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757387.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ84Z021e-152CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2DS340.0A0A2K2DS34_BRADI; Uncharacterized protein
STRINGBRADI1G57560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]