PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57560.1.p
Common NameBRADI_1g57560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 608aa    MW: 63469.7 Da    PI: 7.6973
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-16273332155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a+++a++k++g
  Bradi1g57560.1.p 273 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDQAALKYWG 332
                       78*******************988886678446*************************98 PP
2AP251.72.1e-16377426355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +s    +k  +lg+fgt eeAa+a++ a+ k++g
  Bradi1g57560.1.p 377 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 426
                       9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-16273341IPR016177DNA-binding domain
PfamPF008478.5E-13273332IPR001471AP2/ERF domain
CDDcd000182.84E-20273340No hitNo description
Gene3DG3DSA:3.30.730.101.2E-16274341IPR001471AP2/ERF domain
PROSITE profilePS5103218.913274340IPR001471AP2/ERF domain
SMARTSM003805.5E-29274346IPR001471AP2/ERF domain
PRINTSPR003674.4E-6275286IPR001471AP2/ERF domain
CDDcd000182.97E-23375436No hitNo description
SuperFamilySSF541711.63E-17375435IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17376434IPR001471AP2/ERF domain
PROSITE profilePS5103218.979376434IPR001471AP2/ERF domain
SMARTSM003801.7E-32376440IPR001471AP2/ERF domain
PfamPF008474.5E-11377426IPR001471AP2/ERF domain
PRINTSPR003674.4E-6416436IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MTNDGSNGAA AAAASGWLGF SLSAPHMVDA HQHHHNQQQS HGGLFYPSPA AAAAAYGLGS  60
GDVGAVNTSL GYYSPQLASM PLKSDGSLCI MEALRRTSDN HHHQDNHHGG PKLEDFLGAA  120
GQQQHALSLD NSSTFYYYGG AGNANANGGH QGFLQQQAYD VYGAAAAAEE ESAATAAAMA  180
SWVQASQAQL QLQQHPLALS MSSGAGSLSS CVTLSGAEYG GGGVVGAGAG GEGGGGGGGG  240
RKRAGTAGNN SNNSKQQAVQ HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG  300
QTRKGRQVYL GGYDMEEKAA RAYDQAALKY WGPSTHINFP LEDYAGEVEE MKKMSRQEYV  360
AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFGTQ EEAAEAYDIA  420
AIKFRGLNAV TNFDITRYHV DKIIASNTLL PAELAKRNPS NDPDPNSTLL LQDDASAAIP  480
APPPAHDHQT NAAAAAAFSA ALHDLVAVQG GNGNGNVRMA AAMSAAAAAS SSSLVTSSLS  540
NSRGDDEISP DRAAGGLSSM LFAAKQQQPK LMSASSWAAS SSPASARPAP AAVSIAHMPM  600
FAAWGDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57560.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-147BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757389.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-152CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2DS310.0A0A2K2DS31_BRADI; Uncharacterized protein
STRINGBRADI1G57560.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]