PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57410.3.p
Common NameLOC104581727
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 361aa    MW: 39336.9 Da    PI: 4.3628
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57410.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.3e-131258349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ien+  r+vtfskRr g++K A+ L   ++a+va+++   + k++ +
  Bradi1g57410.3.p 12 IENDDERSVTFSKRRLGLFKGASDLAAVTGARVAIVLETDSTKMHSF 58
                      9**************************************99999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-9161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.862262IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-7424IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-14672IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161258IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-72439IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-73960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPRERRSGVV YIENDDERSV TFSKRRLGLF KGASDLAAVT GARVAIVLET DSTKMHSFGT  60
PSADPIIHAF LSGVPPPEPL TDEVMSTRIS WLQSEVSRLD RENTSEQKRK KLVVQRIKEI  120
QQENPGMVAN HLFSKDEDLN LEDLTNLFNE LLLVQQGTGG RLPPLDHGHQ QMIGGSSVSL  180
NLVPPSVPLW GSDILPHGAL PPAPSPSVPQ SMLAPPFPVQ VPQMLQPAPL VSTPPTDPYQ  240
LPELPPSLEL PLQNYTSPYS TMDPAQNNTG LNSTFQHNVE ESAQLVYSGG NAIVGQDPFG  300
YDQWAYPLSD QPYYERFLEM DGNLGFHGTD VGQAHMGNDG LIDELAQSPS SGEDDDVGRS  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57410.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693480.0KF469348.1 Brachypodium distachyon MADS-box transcription factor 54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228381.10.0pheromone receptor transcription activator
TrEMBLA0A2K2DS210.0A0A2K2DS21_BRADI; Uncharacterized protein
STRINGBRADI1G57410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-14AGAMOUS-like 62
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]