PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g57082.1.p | ||||||||
Common Name | BRADI_1g57082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 741aa MW: 81829.4 Da PI: 5.9502 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5.2e-15 | 68 | 117 | 7 | 56 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +eq+e+Le++F++++ p++ L+++lg+t+ qVk WFqNrRa k Bradi1g57082.1.p 68 HRREQIEQLEAVFQECPFPDEILQLNLSMSLGMTQMQVKAWFQNRRAALK 117 5689******************************************9877 PP | |||||||
2 | START | 84.3 | 2.7e-27 | 244 | 463 | 7 | 205 |
HHHHHHHH..HHC-TT-EEEE..EXCCTTEEEEEEESSS..SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS START 7 aqelvkka..laeepgWvkss..esengdevlqkfeeskv.dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 +e++++a +++ep+W + + e +n++++ f +++ + ++ r +++v + +lv++l+d + W+++++ +++ + ++++ Bradi1g57082.1.p 244 SEEFMSLAvsTLGEPMWLLTVdgEVLNKQTYNVMFRPDQMgFAMDGTRKTAMVMVKADNLVRILMDPA-HWSKMFPgivaSVTSSQIVNPNas 335 55555555336789*******99888899888888888887899999*********************.*******99888888888999999 PP ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE......-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd......seqkppe.sssvvRaellpSgiliepksnghskvtwvehvd 171 + +qlm+ael +l p vp ++ f+R++ q + +w++vdvSvd se++ + + +++lpSg+lie++++g++k+tw+ h+ Bradi1g57082.1.p 336 phELIQLMNAELRVLVPRVPlVKVKFARQCLQVQPNVWAVVDVSVDgipvdiSESNGDSfPTTYTACRMLPSGCLIEELKDGYCKITWMVHAG 428 99******************************************9866555566776667789****************************** PP --SSXXHHHHHHHHHH.HHHHHHHHHHHHTXXXXX CS START 172 lkgrlphwllrslvks.glaegaktwvatlqrqce 205 ++ + +++l sl+ + g+a ga +w+ l+rqce Bradi1g57082.1.p 429 YDMSKIPQLHLSLLDTgGQALGACRWLNSLKRQCE 463 **99988888887765279***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-15 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.268 | 59 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-15 | 60 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-13 | 61 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-14 | 66 | 120 | No hit | No description |
Pfam | PF00046 | 1.8E-12 | 68 | 117 | IPR001356 | Homeobox domain |
SMART | SM00234 | 0.0033 | 238 | 464 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.47E-16 | 242 | 463 | No hit | No description |
Pfam | PF01852 | 3.7E-21 | 244 | 463 | IPR002913 | START domain |
PROSITE profile | PS50848 | 24.138 | 257 | 467 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.31E-6 | 551 | 680 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MDDGEGQQHN CDFLDFEQLL KFGTLGYDQM DGMSSVEPNY TNIDGVDAAA PGQNNNGMIN 60 QTRVSKRHRR EQIEQLEAVF QECPFPDEIL QLNLSMSLGM TQMQVKAWFQ NRRAALKNKM 120 MQRESEFLRE EKEMLEDQKR KINAVIHGKD KRCLRCRGWG PKAYNGDTPE KRRLLAENAK 180 LKEELLQAFS LLNVVSGGRA RAGTPIPKPF SPYGGQLKSQ CATSGGDSGS SPTMLLDHVL 240 SRASEEFMSL AVSTLGEPMW LLTVDGEVLN KQTYNVMFRP DQMGFAMDGT RKTAMVMVKA 300 DNLVRILMDP AHWSKMFPGI VASVTSSQIV NPNASPHELI QLMNAELRVL VPRVPLVKVK 360 FARQCLQVQP NVWAVVDVSV DGIPVDISES NGDSFPTTYT ACRMLPSGCL IEELKDGYCK 420 ITWMVHAGYD MSKIPQLHLS LLDTGGQALG ACRWLNSLKR QCEYLAFLHS DPHPLTNPVA 480 AMLPEVRKSV LESSQQMKMN FYKAMCDSAG RSWSTVDEWA GDCGVGAEKL HLAVRFVTSL 540 AAIYNGDIQT GTQLILSAMT TVWLPGIPAE RVFNYLYDGN RRWEWDSLVA NGEPMQEEVR 600 ITTGQFYGNH VSIFRAIASD GTNNNNKLIL QEAYTDTSCM LVVYVPVDEQ SMKDASMNGG 660 GCASFSTPPS GFAVIPDGLN QQTSPWSSSG AIVSAMYQIL PSSASPQNLT LDTVNNISSL 720 LYHAVNKIKS AVQAEVVVPA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g57082.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314342.1 | 0.0 | homeobox-leucine zipper protein ROC6-like | ||||
TrEMBL | A0A0Q3HE87 | 0.0 | A0A0Q3HE87_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G31600.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8324 | 17 | 42 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 6e-92 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g57082.1.p |