PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57005.1.p
Common NameBRADI_1g57005
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 496aa    MW: 54154.2 Da    PI: 7.0495
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.41.5e-08193213121
           G2-like   1 kprlrWtpeLHerFveaveqL 21 
                       kprlrWt+eLH +Fvea+++L
  Bradi1g57005.1.p 193 KPRLRWTKELHGKFVEAINRL 213
                       79******************9 PP
2Response_reg43.32e-15131281109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHT..TTSEEEEE....ESTTTHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireee..pklpiivv....tahgeeed 85 
                       vl +d++++ +++l+  l   +y +v+ ++d + al+ l + +  +Dl++  +  pg dG++ll++i+ +   p+  +i++    + +++ ++
  Bradi1g57005.1.p  13 VLAIDEDRVCLKILEFTLCLYNY-DVTPVTDEKTALRALGKAKdpFDLVISEVHVPGTDGFKLLRHIAVKMvyPSSSVIICnavlSPNADTKT 104
                       7899*******************.888788888888888555559**********************777678888888762222668999** PP

                       HHHHHHTTESEEEESS--HHHHHH CS
      Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                       ++++l++Ga ++l+Kp+  e+l +
  Bradi1g57005.1.p 105 VKKVLSLGACRYLEKPVCAEQLKN 128
                       *****************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.41E-2110142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-2610153No hitNo description
SMARTSM004481.4E-811130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.69812134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1213128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.74E-1414134No hitNo description
Gene3DG3DSA:1.10.10.606.4E-8190216IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MATANEFWAG TRVLAIDEDR VCLKILEFTL CLYNYDVTPV TDEKTALRAL GKAKDPFDLV  60
ISEVHVPGTD GFKLLRHIAV KMVYPSSSVI ICNAVLSPNA DTKTVKKVLS LGACRYLEKP  120
VCAEQLKNIW QHVLRRKNEA RSHKSSGNAN ADQRVQSGIP EAEQGAKSTR KNSRRKKNDG  180
DGFGENEENS SKKPRLRWTK ELHGKFVEAI NRLVTDHSIK ALAGIILETN QGTASSHLDY  240
YFENIPGEEM LEPVNQFPVQ PPQLASHSSV LMNAPAFFQK ENSPATNLVG ALGDTSKFPY  300
LVGNYNNSFW QASVSSKFPD ILHKDGSYLG SSKAKANIPK INQLASFEGT SSGQIQMVLN  360
EPHNPMAAFI GNTAQVAGFN QQMAPFNKAN NTSLQVEMLN DNFSPGSTST MSLPSLQKGN  420
SVTLTQMVND LSNNSTLPNI EADSIVAPTQ MLNGGNVVGV LPVQEGTADQ QALDFQLNDN  480
NEFAWMIFSA CLTSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3K8R40.0A0A0Q3K8R4_BRADI; Uncharacterized protein
STRINGBRADI5G12160.15e-77(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4991522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-36response regulator 2