PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g56841.1.p
Common NameBRADI_1g56841
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 733aa    MW: 84536.2 Da    PI: 8.6406
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g56841.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1447.3e-14441012490
              FAR1  24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +   + +++f+C+++g+++++k+         a+tr+gCka++++ ++++  w+v+ +++eHnH+l+
  Bradi1g56841.1.p  44 MYSWCRMKEFCCQRQGFQRNTKN---------ATTRCGCKAMIRILLNEKLLWYVKVFVEEHNHPLV 101
                       45567899*********999765.........59*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1048101IPR004330FAR1 DNA binding domain
PfamPF105513.0E-14223305IPR018289MULE transposase domain
PROSITE profilePS509669.347493529IPR007527Zinc finger, SWIM-type
SMARTSM005750.0056504531IPR006564Zinc finger, PMZ-type
PfamPF044341.7E-4504528IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
IVKRTGHIED SLREFCQDRS KQLFKPNIGL EFESSDEAYQ YYNMYSWCRM KEFCCQRQGF  60
QRNTKNATTR CGCKAMIRIL LNEKLLWYVK VFVEEHNHPL VESCGEKKHL FSHKHIDQAT  120
KDLVRHLREN NVSLSWVNLI MGGIYGSMAN VPFTKKSLRT ICSEIARDSL EDDVRKTLEN  180
FHEMIASDPK FVFTAQVDCD DCLRSLMWTS GRSRTLYQHF GDVVTFDTTY ETNIYKMPFG  240
MFVGVNNHFQ SDLCWRAWAF EEFVTMMGGK APITMLTDQC LAMTIAIRES LKSTHHRWCK  300
WHVLRKAKEV LSHVYRGHPT FAGDFNKLIN HMLTPEEFEA AWHSLVQRYG LVKHPFMIRA  360
YESRDKWAKP YFNNIFCACM TSTQRSESAN HVLKIYVPAK SSINMFVKHL EEHASGMFEY  420
EAVPGLSKSV KTAYGYPLEK HAAEIYTPAV YGKFKEELLK STHYVVQMNR DDSSFEVEHI  480
DAAERESWSR VQFLIEIVSP DGYHKCDCGL FEHFGVICCH IITVMIHKGV WMIPPCHIVK  540
RWTREARGQM AAVVRNGAQN THMTLLMMWQ QVLHFATLEL NNMGQYDDNT FSMAMKSIES  600
IKNDIRAYKK TISRTCQVGY KSNPVELSGE EESGESSSIP TSQLQIFDSG KNIGLVVSSI  660
KAPLIKKMNG RPTNKRFMSH FDATIRKGKK PRQMNGPISA PGGRSGVKQT RFCSVCHYEE  720
HDRRKCPSKD LC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g56841.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3LCK00.0A0A0Q3LCK0_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-85FAR1-related sequence 5