PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g55630.2.p
Common NameBRADI_1g55630, LOC100835800
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 458aa    MW: 50304.5 Da    PI: 4.6506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g55630.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35551452101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++ ++++sws ++nsfvv+d++ fa+++Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll
  Bradi1g55630.2.p  55 FLTKTYDMVDDQNSNHVVSWSPTNNSFVVWDPHAFATSLLPRHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLL 138
                       9********************999*****************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Bradi1g55630.2.p 139 KNIRRRK 145
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.3E-6251144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-3951144IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.62E-3651144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3255144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-185578IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-18106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDPLLSLVKE EQEGHGGGGG SPPAAVAAED GPSTVAAAAV PRPMEGLHDV GPPPFLTKTY  60
DMVDDQNSNH VVSWSPTNNS FVVWDPHAFA TSLLPRHFKH SNFSSFVRQL NTYGFRKVDP  120
DRWEFANEGF LRGQRHLLKN IRRRKPPAHP ASNQQSFGSS YLEVGHFGND AEIDRLKRDK  180
ELLMAQVVKL RQEQQDTKAR LKAMEDRLHG NEQKQQQMVT FLARVLRNPE FLKQLIAKNE  240
MRKQLHDTIS KKRRRRIDQG TEADHMGASS SLQQESPILF DPHVSMELLA DGSVQLLADD  300
IPPDLEGSGG FVADGIPPDM ESSVEHVADG ILPGLEGSVE LLADGIPPDL EGSLDLLADG  360
IPLNLEGSME LLADGIPSGL EGPGIKTNGV MEPHGFDLGI CGMQQNRAQG VLKDNFWDDL  420
LNEELGDEDD NPVIMEDMNL LSEKMGYLVS DTPTPTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-245314427129Heat shock factor protein 1
5d5v_B1e-245314427129Heat shock factor protein 1
5d5v_D1e-245314427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255KKRRRR
2251256KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g55630.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228292.10.0heat stress transcription factor A-2b
RefseqXP_010228293.10.0heat stress transcription factor A-2b
RefseqXP_024313196.10.0heat stress transcription factor A-2b
SwissprotQ6VBB21e-156HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLI1H3550.0I1H355_BRADI; Uncharacterized protein
STRINGBRADI1G55630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]