PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g54450.1.p | ||||||||
Common Name | BRADI_1g54450, LOC100843318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27562.1 Da PI: 9.5151 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 26 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d ++ r++lg+f tae+Aa+a+++a+ l+g Bradi1g54450.1.p 26 CKFVGVRQRP-SGRWVAEIKDT---TaHKIRVWLGTFETAEDAARAYDEAACLLRG 77 799*******.7*********4...2335**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-13 | 26 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.03E-28 | 26 | 87 | No hit | No description |
SMART | SM00380 | 1.9E-35 | 27 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 27 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-28 | 27 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.112 | 27 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MELQFQQQQR QAECQAKGRR RSSSKCKFVG VRQRPSGRWV AEIKDTTAHK IRVWLGTFET 60 AEDAARAYDE AACLLRGSNT RTNFAAAVSP SPLTSRIRTL LTHKKLKKHT APPQLSMAHG 120 YGHAGPIVAD AAGSSTSSSS SISFPMSSSN QQQRVADKSY MAYQLIDRFD QQPWTAALGA 180 SVSPVAAGDA HGPVIPADVM RMGKKEDSGS ASASPGAAMS GVVQEQDRGF DIGSDPCGSL 240 WDLPPICQLS CRSLMY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 18 | 84 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g54450.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727662 | 2e-65 | KJ727662.1 Zea mays clone pUT5589 AP2-EREBP transcription factor (EREB82) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228242.1 | 0.0 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | I1H2S3 | 0.0 | I1H2S3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G54450.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-23 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g54450.1.p |
Entrez Gene | 100843318 |