PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54111.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 663aa    MW: 72394 Da    PI: 6.2981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54111.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.1e-13476522455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Bradi1g54111.3.p 476 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 522
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-508211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18475541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11476521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17476537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-14476526No hitNo description
SMARTSM003532.4E-16478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MASCSEVHKS LQAVAQGLRW TYALLWQLCP DQGALLWAEG HYNGAIKTRK TVQQAHGAPA  60
PAPAEAADQA ARHRSRQLKE LFESLAREAA AAGGMMTGCR VDAVQAESAA RRPTAALAPE  120
DLTETEWFYL MCASYSFPPH VGLPGRAFAK GGHVWLCRAN EVDSKVFSRA ILAKSAGIQT  180
VVCIPIVDGV LEIGTTENVK EDISLVQYAM SIIMDQQDIQ MIPTISEHST SDKICHMYQQ  240
SFQTQRKIHG GQENEMEHDD DDIGAECASG SGTNAGRNYS QDTPLNIVGN TDDQETPNAG  300
SSELMQLEIP EKVRDGCSSN LDDEIQMLMV CQNSNDQSDF QRQDEPCDSW HFLYEELCSG  360
YPQSSAGENQ DMVLQPENAH YTETVMSILQ RNTRRQAAGT STRSYVAASH QSSFSTWHPT  420
MLQQGRTATG AGGTTPQRML RSVLFNNAAA SGHGKPADDF PRGGGPRREA ADLSANHVLQ  480
ERKRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRSRIQDLES SSTRQQQQVV  540
HGCGGLTAAA DQARSAKRKL ATREGSSASS SSAPSSSSAE VQVSIIESDA LLELRCPDRR  600
GLLLRAMQAL QDQLRLEITA VRASSDDGVL LAELRAKVRE VHGRRSSISE VKRAIHLIIS  660
SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-151120752225Transcription factor MYC3
4ywc_A5e-151120752225Transcription factor MYC3
4ywc_B5e-151120752225Transcription factor MYC3
5t0f_A4e-1572069185Transcription factor MYC3
5t0q_A4e-1572069185Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERKRRE
2481486RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54111.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312732.10.0basic helix-loop-helix protein A isoform X1
TrEMBLA0A2K2DRC80.0A0A2K2DRC8_BRADI; Uncharacterized protein
STRINGBRADI1G54070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-64bHLH family protein