PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g53770.1.p
Common NameBRADI_1g53770, LOC100824217
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 280aa    MW: 31556.4 Da    PI: 4.8872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g53770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.5e-51161411128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv +yL+++++g+  ++  +i+evd+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v 
  Bradi1g53770.1.p  16 LPPGFRFHPTDEELVADYLCARAAGRGAPV-PIIAEVDLYRFDPWELPSMALFGTREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA 107
                       79*************************999.88***************76667899************************************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + kg++ g+kk Lvfy+g+ p+g+ktdW+mheyrl
  Bradi1g53770.1.p 108 H-KGRTAGIKKALVFYHGKPPRGVKTDWIMHEYRL 141
                       *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-6312168IPR003441NAC domain
PROSITE profilePS5100559.08116168IPR003441NAC domain
PfamPF023655.9E-2617141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGMGAGRRDA EAELNLPPGF RFHPTDEELV ADYLCARAAG RGAPVPIIAE VDLYRFDPWE  60
LPSMALFGTR EWYFFTPRDR KYPNGSRPNR AAGNGYWKAT GADKPVAHKG RTAGIKKALV  120
FYHGKPPRGV KTDWIMHEYR LADTNRSSKK KDGTLRLDDW VLCRLYNKKN EWEKMQQQQE  180
QDKAAMATAS WGETRTPESE IDNDPFPELA DSSIPAYTTD AILPKEELQE LELDNDWLMG  240
INLDDLQGPG SMLPWDDSYA ASFLSPVGAK TEQDIGFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-9531741174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g53770.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557366.10.0NAC domain-containing protein 67
SwissprotQ7EZT11e-128NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLI1H2K00.0I1H2K0_BRADI; Uncharacterized protein
STRINGBRADI1G53770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-85NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]