PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52490.1.p
Common NameBRADI_1g52490, LOC104581666
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 104aa    MW: 10863.8 Da    PI: 7.5757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-052446123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H++ H
  Bradi1g52490.1.p 24 YECSFCKRGFTNAQALGGHMNIH 46
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-72250No hitNo description
PfamPF139127.1E-62348IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-42448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3232451IPR007087Zinc finger, C2H2
SMARTSM003550.0092446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEGDGFSKSG SPEESGARRA PAYYECSFCK RGFTNAQALG GHMNIHRKDR GGAGGKSRGA  60
APPAGQQDGA GGDQVHLGLT LGRNEDSRDG LDLELRLGHY PYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228158.18e-70uncharacterized protein LOC104581666
TrEMBLI1H2552e-68I1H255_BRADI; Uncharacterized protein
STRINGBRADI1G52490.13e-69(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-14C2H2 family protein