PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g52480.3.p | ||||||||
Common Name | BRADI_1g52480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 638aa MW: 70268.1 Da PI: 5.8908 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.1 | 3.3e-44 | 14 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 lp+GfrF+Ptdeelv +yLk k++g++++ vi++vd+ ++ePwdLp k +k+++ ew+fF++rd+ + ++ r+nr+t++gyWkatgkd Bradi1g52480.3.p 14 LPVGFRFRPTDEELVRHYLKGKIAGHRHPDLLVIPDVDLSSCEPWDLPsKsVIKSDDPEWFFFARRDRPKYpgKSPRSNRSTAAGYWKATGKD 106 79*************************999899**************96446777888********99655234569**************** PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + s+ +++l+g+kktLvf++grap+g +t W++heyr+ Bradi1g52480.3.p 107 RLIRSSssnnNKTLIGIKKTLVFHRGRAPRGLRTPWIIHEYRA 149 ****9977766667***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-50 | 5 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.789 | 14 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 15 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 638 aa Download sequence Send to blast |
MGKAVAMSAA AEVLPVGFRF RPTDEELVRH YLKGKIAGHR HPDLLVIPDV DLSSCEPWDL 60 PSKSVIKSDD PEWFFFARRD RPKYPGKSPR SNRSTAAGYW KATGKDRLIR SSSSNNNKTL 120 IGIKKTLVFH RGRAPRGLRT PWIIHEYRAA EPSFQSGRNG SFVLYRLFNK QDGETPSKSS 180 RSDLQNGGDD QDKATTSMTS DLSLLTATKP TTTDHSMTTN LITAVDGDRV SHEDAFLDVL 240 TQLPDLHADQ RYDGFPNISS PMRPYTDHPF VGNMGDQDFS AYFDSIIAEQ NIQDMLLHPD 300 YAEMDKHPAG NTESDPTALV TSTANSNSMA PLEDSWREDY YDQRADDTDA TRCLSALSTL 360 QSDTSGHNHE TRPQTNIMYG GANLASQCYS QCQLPLALDP QTESSHISGD LWNPYAQHLL 420 DSMLEPSSSD MINSEASNGQ GGWAVPPSMQ QSEVQDFIDL QQGTAARRVR LVCGVQRAPA 480 SQLIITPHLK SEDEAGSCCS TGSSSNSHDE DYANAGSRTM AGDMMHIEDT GHIPTQVASL 540 VKVTDKLQHL SLSDMPEHIK MPRRHGAGLT QRLKHDSAQS VHQDLLQNSN HVPGESSSET 600 TGRSTGSVVR LLWLALLVMA PLLVLVGVWS SLNYWQM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-38 | 1 | 172 | 1 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g52480.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228157.1 | 0.0 | protein NTM1-like 9 | ||||
TrEMBL | A0A0Q3HC13 | 0.0 | A0A0Q3HC13_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G52480.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.3 | 6e-58 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g52480.3.p |