PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g52360.1.p | ||||||||
Common Name | BRADI_1g52360, LOC100825439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CO-like | ||||||||
Protein Properties | Length: 394aa MW: 40849.3 Da PI: 6.8027 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.6e-06 | 14 | 55 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ +++ fC + lC +C + H H++ Bradi1g52360.1.p 14 ACNNCAAEQAVVFCAADAARLCLECDGAVHAAsalaanHSRA 55 6******99*****************9999656777777765 PP | |||||||
2 | CCT | 57.1 | 6.6e-20 | 337 | 380 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRY+eK+k+RkF K+i Y+sRKa+A++R+RvKGrF+k++ Bradi1g52360.1.p 337 RDRAKLRYNEKKKNRKFCKQIMYASRKARADTRKRVKGRFAKAT 380 8999*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.6E-7 | 10 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00952 | 15 | 39 | No hit | No description |
PROSITE profile | PS50119 | 10.58 | 15 | 57 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 13.791 | 337 | 379 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-14 | 337 | 379 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDDPRRHHHL AYGACNNCAA EQAVVFCAAD AARLCLECDG AVHAASALAA NHSRAPLCDS 60 CFAAPAAVRC AHDTEDGGGQ FTFCFGCAGH RAPPEGWAAS CPVAHYTGCP TPADVLRLLS 120 VDAPPAQEDF DAWLADKLPQ ILQDVVQDGS QICEGGSTAP STTATITGAE RSSGGGAGVN 180 GSSFVGPNSD HDWNITTNTA TTGTVGHHAA AAGGGANHNN SLAFEPTPSS SVCHIFSSSS 240 SYCSSSLSCL QQQSAMASAT SLLHSLDPQL QLLDGGAAAA AGCSFVLPPA VAGANFLTIS 300 PPQAPPPDQI NGGEGSSTMS GAQQQDPTTM TKKREERDRA KLRYNEKKKN RKFCKQIMYA 360 SRKARADTRK RVKGRFAKAT NENQHILHSA DSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g52360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228152.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
TrEMBL | I1H241 | 0.0 | I1H241_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G52360.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14109 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 2e-14 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g52360.1.p |
Entrez Gene | 100825439 |