PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g52187.2.p
Common NameBRADI_1g52187, LOC100840485, SWN4
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 337aa    MW: 38855.4 Da    PI: 6.7112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g52187.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-54101401129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++      ++e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Bradi1g52187.2.p  10 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcriGPEEEQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 101
                       69****************************.99**************95343322335669******************************** PP

               NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       k++++ k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Bradi1g52187.2.p 102 KPIYA-KHCLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 140
                       *****.899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-614160IPR003441NAC domain
PROSITE profilePS5100559.04510160IPR003441NAC domain
PfamPF023651.8E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSNSTQQQQV PPGFRFHPTD EELVDYYLRK KVASRRIDLN VIKDVDLYKI EPWDLQEKCR  60
IGPEEEQSDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYAKHCL VGMRKTLVYY  120
KGRAPNGHKS DWIMHEYRLE TNENGPPQEE GWVVCRVFKK RLPATRRDLD HDAPCWYVDD  180
DGPFMHDLNA PTMNGIMPPH HSMAALQEQH LQMLNNTYKR ELKLQFQMPN HHHHDVLSTI  240
IPHDLETSSF HSLLVSPDDH QVNAHHHVQL IDHAAVDQST TDWRVLDKFV ASQLSNDATK  300
GVDYTDGGIL QLNEKQEGAT DYASTSTSSS QVDPWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5031618169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g52187.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934250.0JQ693425.1 Brachypodium distachyon SWN4 (SWN4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304791.10.0NAC domain-containing protein 7-like
RefseqXP_014754958.10.0NAC domain-containing protein 7-like isoform X1
SwissprotQ9FWX21e-110NAC7_ARATH; NAC domain-containing protein 7
TrEMBLI1H2180.0I1H218_BRADI; SWN4
STRINGBRADI1G52187.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.11e-102Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Valdivia ER, et al.
    Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon.
    J. Exp. Bot., 2013. 64(5): p. 1333-43
    [PMID:23386682]