PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g51747.2.p | ||||||||
Common Name | BRADI_1g51747, LOC100833140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 28333.2 Da PI: 7.5847 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++ + G g+W++ ++ g++R++k+c++rw +yl Bradi1g51747.2.p 15 KGPWTPEEDKLLVDYISEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.6e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+ +E++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Bradi1g51747.2.p 68 RGRFDDDEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.326 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.35 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRSPCCDGE AGVKKGPWTP EEDKLLVDYI SEKGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FDDDEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLGM 120 GIDPVTHRPR TDLSLLAGLP ALLAAAGSFS SGSGAGASWV ENMNALRLQA DAAKFQLLQG 180 LVRALTTNTS AAAAPMAGNG GGSGVQDHLM ALLGGGEETT PASSPMFFDG LESLNLDDHL 240 NTDGGWKDLL EQMSWLNSTE L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g51747.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-122 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229990.1 | 1e-130 | transcription factor MYB93 | ||||
Swissprot | Q9S9Z2 | 5e-82 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2K2DQZ6 | 0.0 | A0A2K2DQZ6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G51747.1 | 1e-130 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 3e-78 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g51747.2.p |
Entrez Gene | 100833140 |
Publications ? help Back to Top | |||
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