PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g51599.2.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 508aa MW: 58210.8 Da PI: 9.1522

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g51599.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	5.6e-09	13	52	51	90
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++++++ r+gCk+ +++ ++ d+ w++++++l HnH+l+ Bradi1g51599.2.p 13 KKKNTSSVRCGCKCFIRLLRSGDHGWYIKECRLVHNHKLS 52 567888********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-6	13	52	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-27	175	267	IPR018289	MULE transposase domain
Gene3D	G3DSA:4.10.60.10	9.9E-4	450	494	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MQEIVCGCEG IPKKKNTSSV RCGCKCFIRL LRSGDHGWYI KECRLVHNHK LSRNSGEKMC 60 WPSHKHIDRY TRELVRNLRE NNVPLTKVYS ILGTYFGSTE DIPFNKRSLQ NLCKQISREE 120 ANDDVRKTME LFTKMRDEDP SFVYTADLDS DGRIRTLIWV NGKSKLDYRY FGDAITFDTT 180 YKTNLYGMPF GLFVGVNNHF QSIIFSGVLM RQETIESFEW IFREFTSLMG GKAPITILTD 240 QCRAMEVAIE CVFTETTHRW CKWHVLKMAK ERLGSVYTKY STFKAEFHKL INYSITVMLQ 300 LGVDKVPQAH ILKRWTKDAS DVLPDHLAHL QKDRGSTRSQ TYRHASLHVA ALELANIGDK 360 NIDCYHDVLK YITDGTKKFG EMYQQTDGRG LQELIAITNV HPEPVDCSEV SPQQLNVAVI 420 APVRNRPEGR PTNSRDKPSY ELKWKRTRFC TICKLSGHNR SACKANPDKP PVKRSDPKCG 480 KCGVVGHRRN VCASSVDVQQ IEYQLGV*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MQEIVCGCEG IPKKKNTSSV RCGCKCFIRL LRSGDHGWYI KECRLVHNHK LSRNSGEKMC  60
WPSHKHIDRY TRELVRNLRE NNVPLTKVYS ILGTYFGSTE DIPFNKRSLQ NLCKQISREE  120
ANDDVRKTME LFTKMRDEDP SFVYTADLDS DGRIRTLIWV NGKSKLDYRY FGDAITFDTT  180
YKTNLYGMPF GLFVGVNNHF QSIIFSGVLM RQETIESFEW IFREFTSLMG GKAPITILTD  240
QCRAMEVAIE CVFTETTHRW CKWHVLKMAK ERLGSVYTKY STFKAEFHKL INYSITVMLQ  300
LGVDKVPQAH ILKRWTKDAS DVLPDHLAHL QKDRGSTRSQ TYRHASLHVA ALELANIGDK  360
NIDCYHDVLK YITDGTKKFG EMYQQTDGRG LQELIAITNV HPEPVDCSEV SPQQLNVAVI  420
APVRNRPEGR PTNSRDKPSY ELKWKRTRFC TICKLSGHNR SACKANPDKP PVKRSDPKCG  480
KCGVVGHRRN VCASSVDVQQ IEYQLGV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g51599.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024317136.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2DQY4	0.0	A0A2K2DQY4_BRADI; Uncharacterized protein
STRING	BRADI1G51600.1	1e-150	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-46	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g51599.2.p