PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g51599.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 663aa    MW: 74957.5 Da    PI: 8.6959
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g51599.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.21.1e-12120207190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ evGF +r  ksk+        k+    t+++ vC +eg ++++++         ++ r+gCk+ +++ ++ d+ w++++++l Hn
  Bradi1g51599.1.p 120 EYFNLYSWEVGFGIRYGKSKSYkcksgpkKDVVYQTMQEIVCGCEGIPKKKNT---------SSVRCGCKCFIRLLRSGDHGWYIKECRLVHN 203
                       589************88776655566763333445678899999999988655.........59***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi1g51599.1.p 204 HKLS 207
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575123No hitNo description
PfamPF031011.7E-9120207IPR004330FAR1 DNA binding domain
PfamPF105511.7E-27330422IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGEPARSMEV GIGSLSACSF ASCDNLDGVQ RNCRNDVPQC ADEASVEEWS EVGAASVEAS  60
GLSASSRRKK SDAGPAVRLP VPGRSSPLEN ALRGFAHRTT ENILLPEIGL CFDSLPEAYE  120
YFNLYSWEVG FGIRYGKSKS YKCKSGPKKD VVYQTMQEIV CGCEGIPKKK NTSSVRCGCK  180
CFIRLLRSGD HGWYIKECRL VHNHKLSRNS GEKMCWPSHK HIDRYTRELV RNLRENNVPL  240
TKVYSILGTY FGSTEDIPFN KRSLQNLCKQ ISREEANDDV RKTMELFTKM RDEDPSFVYT  300
ADLDSDGRIR TLIWVNGKSK LDYRYFGDAI TFDTTYKTNL YGMPFGLFVG VNNHFQSIIF  360
SGVLMRQETI ESFEWIFREF TSLMGGKAPI TILTDQCRAM EVAIECVFTE TTHRWCKWHV  420
LKMAKERLGS VYTKYSTFKA EFHKLINYSI TVMLQLGVDK VPQAHILKRW TKDASDVLPD  480
HLAHLQKDRG STRSQTYRHA SLHVAALELA NIGDKNIDCY HDVLKYITDG TKKFGEMYQQ  540
TDGRGLQELI AITNVHPEPV DCSEVSPQQL NVAVIAPVRN RPEGRPTNSR DKPSYELKWK  600
RTRFCTICKL SGHNRSACKA NPDKPPVKRS DPKCGKCGVV GHRRNVCASS VDVQQIEYQL  660
GV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g51599.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317136.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DQY40.0A0A2K2DQY4_BRADI; Uncharacterized protein
STRINGBRADI1G51600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-47FAR1-related sequence 5