PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g51281.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 487aa MW: 53962.4 Da PI: 5.1846

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g51281.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.3	6.8e-15	120	235	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............................tekerrtraetrtgCkakl 66 Yn+YA+ + Fs++ ++s++s +++ + k + + ++++ + + +k+rr+++ ++tgCkak+ Bradi1g51281.1.p 120 HYNAYARVMVFSIKSNTSRRSADTNLFRKPKPMDDAASQSSNPTGNsskarrdesssdeehvdapnedpllfrkVVKKRRRESIKQTGCKAKM 212 6******************6666555444333333333222222455677788999***********9999999********* PP FAR1 67 kvkkekdgkwevtkleleHnHela 90 +vk+ dg+wev+ ++ eHnHel Bradi1g51281.1.p 213 TVKLI-DGRWEVIFFVAEHNHELI 235 *.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-12	120	235	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-17	358	410	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MLDLNEIPCD LDDGFGECVE PSYCTPAIPV AVHEEVGESP VTICIAENEP LVGAPIAGDS 60 TAVADHTNVV AEDNVGVAED TTGVACDAPD NIEQEIEYSS QPQEPFLGMR FDTLAGAKAH 120 YNAYARVMVF SIKSNTSRRS ADTNLFRKPK PMDDAASQSS NPTGNSSKAR RDESSSDEEH 180 VDAPNEDPLL FRKVVKKRRR ESIKQTGCKA KMTVKLIDGR WEVIFFVAEH NHELITKPSL 240 TKYLLSHKNI SPKEEAFLRI LDDCNLETGQ MMTLMSTFYA NVFIVPYTTK TVSNFRSKIR 300 SERKGDDMAE TVSYFMAKQE EDLSFYFNGK LDENERVELL FWVDGIARKA YKESYHHCIS 360 FDTTYLTNQY NMPFAPFIGI NRHGQSFMLG CGFMRDETAS SFDWLFQQYL CNGAGAVRGR 420 SSDGGARRSE RWTTKGLPVE KGGASSLGRG GSGDGDEGRL KRTTTWGFLP RTFADPCSRT 480 ASSAGP*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MLDLNEIPCD LDDGFGECVE PSYCTPAIPV AVHEEVGESP VTICIAENEP LVGAPIAGDS  60
TAVADHTNVV AEDNVGVAED TTGVACDAPD NIEQEIEYSS QPQEPFLGMR FDTLAGAKAH  120
YNAYARVMVF SIKSNTSRRS ADTNLFRKPK PMDDAASQSS NPTGNSSKAR RDESSSDEEH  180
VDAPNEDPLL FRKVVKKRRR ESIKQTGCKA KMTVKLIDGR WEVIFFVAEH NHELITKPSL  240
TKYLLSHKNI SPKEEAFLRI LDDCNLETGQ MMTLMSTFYA NVFIVPYTTK TVSNFRSKIR  300
SERKGDDMAE TVSYFMAKQE EDLSFYFNGK LDENERVELL FWVDGIARKA YKESYHHCIS  360
FDTTYLTNQY NMPFAPFIGI NRHGQSFMLG CGFMRDETAS SFDWLFQQYL CNGAGAVRGR  420
SSDGGARRSE RWTTKGLPVE KGGASSLGRG GSGDGDEGRL KRTTTWGFLP RTFADPCSRT  480
ASSAGP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g51281.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233530.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2DQW8	0.0	A0A2K2DQW8_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g51281.1.p